MirGeneDB ID | Cbr-Mir-9-P15 |
Family name |
MIR-9 (all species) |
Seed |
UAAAGCU |
Species |
Roundworm (Caenorhabditis briggsae) |
MiRBase ID |
cbr-mir-79
|
Paralogues |
Cbr-Mir-9-P14
Cbr-Mir-9-P16
|
Orthologues |
Bfl-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cel-Mir-9-P15
Cin-Mir-9
Cte-Mir-9
Dma-Mir-9-o15
Dpu-Mir-9-o15
Esc-Mir-9
Isc-Mir-9
Lan-Mir-9
Lgi-Mir-9
Npo-Mir-9
Obi-Mir-9
Ovu-Mir-9
Pmi-Mir-9
Spu-Mir-9
Xbo-Mir-9
|
Node of Origin (locus) |
Caenorhabditis
|
Node of Origin (family) |
Bilateria
|
Genome context (CB4) |
I: 1849428-1849490 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAAAUCCCACAUUCUAGAACAUUCUCCGAUCUUUGGUGAUUCAGCUUAAAUGAUAGAAUUCAGACGUCUUCAUAAAGCUAGGUUACCAAAGCUCGGCGUUCCAGUUCGACCAUUUUAAUCCUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAAAUCCCACAUUCUAGAACAUUCU--| U UC AA UAGAAUU
CCGA CUUUGGUGAU AGCUU AUGA C
GGCU GAAACCAUUG UCGAA UACU A
UUCCUAAUUUUACCAGCUUGACCUUGC^ C GA A- UCUGCAG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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01 |
02 |
03 |
04 |
05 |
06 |
07 |
08 |
09 |
10 |
11 |
12 |
13 |
14 |
15 |
16 |
Cb |
Ea |
Ma |
Yo |
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Star sequence |
Cbr-Mir-9-P15_5p* |
mirBase accession | None |
Sequence |
0- CUUUGGUGAUUCAGCUUAAAUGA -23
Get sequence
|
Mature sequence |
Cbr-Mir-9-P15_3p |
mirBase accession | MIMAT0000486 |
Sequence |
41- AUAAAGCUAGGUUACCAAAGCU -63
Get sequence
|