MirGeneDB ID | Cte-Mir-2707 |
Family name |
MIR-2707 (all species) |
Seed |
UACUUAU |
Species |
Polychaete worm (Capitella teleta) |
MiRBase ID |
cte-mir-2707
|
Paralogues |
|
Orthologues |
Efe-Mir-2707-v1
Efe-Mir-2707-v2
|
Node of Origin (locus) |
Annelida
|
Node of Origin (family) |
Annelida
|
Genome context (Capitella_teleta_v1.0) |
CAPTEscaffold_105: 375781-375840 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUGGCCAUUGGUGAACUGUGUGUAAAGUGCCUGUCAAGCUGAUUAAGUAUUGAUGCAACACGAUGAAUACUUAUUCAGCUUCUGACAGUUGGUUUCCACAACUGAACAACACAUGCAACC
Get precursor sequence
|
Structure | 10 20 30 40 50
UUGGCCAUUGGUGAACUG-- U G GC --| U G UGCA
UGUG AAA U CUGUCA AGCUGA UAAGUAUU A A
ACAC UUU G GACAGU UCGACU AUUCAUAA U C
CCAACGUACACAACAAGUCA C G UU CU^ U G AGCA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Cte-Mir-2707_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CUGUCAAGCUGAUUAAGUAUUGA -23
Get sequence
|
Mature sequence |
Cte-Mir-2707_3p |
mirBase accession | MIMAT0013574 |
Sequence |
36- AUACUUAUUCAGCUUCUGACAGUU -60
Get sequence
|