MirGeneDB ID | Dmo-Mir-279-P3 |
Family name |
MIR-279 (all species) |
Seed |
GACUAGA |
Species |
Fruit fly (Drosophila mojavensis) |
MiRBase ID |
|
Paralogues |
Dmo-Mir-279-P1
Dmo-Mir-279-P2
|
Orthologues |
Aae-Mir-279-P3
Bpl-Mir-279
Cgi-Mir-279
Dan-Mir-279-P3
Dma-Mir-279-o3
Dme-Mir-279-P3
Dpu-Mir-279-o3
Dsi-Mir-279-P3
Dya-Mir-279-P3
Esc-Mir-279
Isc-Mir-279
Lgi-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
|
Node of Origin (locus) |
Diptera
|
Node of Origin (family) |
Protostomia
|
Genome context (Dmoj_caf1) |
scaffold_6540: 26449303-26449366 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUUUGCUCUUCUCUGACUCUAUUUUGUCGGCGAACAUGGAUCUAGUGCACGGUUGUUCAUGAUUAAGUUCGUGACUAGAUUUCAUGCUCGUCUAUUAAGUUGGGUCAAUACACACAGCGAAAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUUUGCUCUUCUCUGA-- U U C A -| G GUUGUUCA
CUC AUUU GU GGCGA CAUG GAUCUAGU CACG U
GGG UGAA UA CUGCU GUAC UUAGAUCA GUGC G
AAAAGCGACACACAUAACU U U U C U^ - UUGAAUUA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut -1 on both arms. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Dmo-Mir-279-P3_5p* |
mirBase accession | None |
Sequence |
0- GCGAACAUGGAUCUAGUGCACG -22
Get sequence
|
Mature sequence |
Dmo-Mir-279-P3_3p |
mirBase accession | None |
Sequence |
42- UGACUAGAUUUCAUGCUCGUCU -64
Get sequence
|