MirGeneDB ID | Efe-Mir-216-P1b |
Family name |
MIR-216 (all species) |
Seed |
AAUAUCA |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-216-P1a
Efe-Mir-216-P2
|
Orthologues |
Aae-Mir-216-P1
Asu-Mir-216-P1
Bge-Mir-216-P1
Cgi-Mir-216-P1
Cte-Mir-216-P1
Dan-Mir-216-P1
Dma-Mir-216-P1
Dme-Mir-216-P1
Dmo-Mir-216-P1
Dpu-Mir-216-P1
Dsi-Mir-216-P1
Dya-Mir-216-P1
Esc-Mir-216-P1
Hme-Mir-216-P1
Lgi-Mir-216-P1
Tca-Mir-216-P1
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Bilateria
|
Genome context (Efe_combined) |
Efet.01.65362: 517-605 [-]
|
Precursor (pre-Mir +30nt flank) |
AUUCAGGUAUCGAUGAUGAUAGCGUCUGGCUAAUAUCAGCAGGUAAAUCGGAGAUCUGCCUCAGCGUCCUUCGCUGGUACGGCAUCAGGAGAAAACUCCGGAUGCCUACUGGUAUUAGGCGGACGCGUCUGACUGCAGCCAAAAGCAUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70
AUUCAGGUAUCGAUGAU---| A G C AA AUCUGCCUCAGCGUCCUUCG
GAU GCGUCUG CUAAUAUCAG AGGUA UCGGAG C
CUG CGCAGGC GAUUAUGGUC UCCGU GGCCUC U
CUACGAAAACCGACGUCAGU^ - G A A- AAAAGAGGACUACGGCAUGG
140 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Efe-Mir-216-P1b_5p |
mirBase accession | None |
Sequence |
0- UAAUAUCAGCAGGUAAAUCGGAG -23
Get sequence
|
Star sequence |
Efe-Mir-216-P1b_3p* |
mirBase accession | None |
Sequence |
67- CCGGAUGCCUACUGGUAUUAGG -89
Get sequence
|