MirGeneDB ID | Lan-Mir-281-P9 |
Family name |
MIR-281 (all species) |
Seed |
AGAGAGC |
Species |
Lingula (Lingula anatina) |
MiRBase ID |
|
Paralogues |
Lan-Mir-281-P10
|
Orthologues |
Aae-Mir-281
Asu-Mir-281
Bfl-Mir-281
Bge-Mir-281
Bla-Mir-281
Bpl-Mir-281
Cgi-Mir-281
Cin-Mir-281
Csc-Mir-281
Cte-Mir-281
Dma-Mir-281
Dpu-Mir-281
Ebu-Mir-281
Esc-Mir-281
Hme-Mir-281
Isc-Mir-281
Lgi-Mir-281-P9
Npo-Mir-281
Obi-Mir-281
Ovu-Mir-281
Pfl-Mir-281
Sko-Mir-281
Sme-Mir-281
Sto-Mir-281
Tca-Mir-281
|
Node of Origin (locus) |
L. anatina
|
Node of Origin (family) |
Bilateria
|
Genome context (LinAna_1.0) |
LFEI01000338: 326773-326829 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAGGGUCAUCUUGACCCAAGUCCGGCGAUGAAGAGAGCAUUCUUGGACAGUGUAUAAUAGCCAACUGUCAUGGAGUUGCUCUCUUUACCGACUGUGGCUAAUGACGUCACACCAAAU
Get precursor sequence
|
Structure | 10 20 30 40 50
CAGGGUCAUCUUGACCCA - - A -| UG GUAUA
AGUC CGG CG UGAAGAGAGC AUUCU GACAGU A
UCGG GUC GC AUUUCUCUCG UGAGG CUGUCA U
UAAACCACACUGCAGUAA U A C U^ UA ACCGA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Lan-Mir-281-P9_5p |
mirBase accession | None |
Sequence |
0- AAGAGAGCAUUCUUGGACAGU -21
Get sequence
|
Co-mature sequence |
Lan-Mir-281-P9_3p |
mirBase accession | None |
Sequence |
35- UGUCAUGGAGUUGCUCUCUUUA -57
Get sequence
|