MirGeneDB ID | Lgi-Mir-10-P5 |
Family name |
MIR-10 (all species) |
Seed |
UACCCUG |
Species |
Owl limpet (Lottia gigantea) |
MiRBase ID |
|
Paralogues |
Lgi-Mir-10-P1
Lgi-Mir-10-P2
Lgi-Mir-10-P3
Lgi-Mir-10-P6
|
Orthologues |
Cgi-Mir-10-P5
Cte-Mir-10-P5
Efe-Mir-10-P5a
Efe-Mir-10-P5b
Nve-Mir-10
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Eumetazoa
|
Genome context (Lotgi1) |
LOTGIsca_12: 2736439-2736501 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAUCUACUCCGAGAAAUGGGCUUGGUUCGUUUACCCUGUAGUACCGAGCAAGUGGACAAUUUUGAAAAACACUGUUCGCUACUGGGGGUCAAAGAACUGAGUUUGAAAACAACAAUUCAGAAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAUCUACUCCGAGAAAU--| UG G U G C A GACAAUU
GGGCU GUUC UU ACCCU UAGUA CGAGCA GUG \
UUUGA CAAG AA UGGGG GUCAU GCUUGU CAC U
GAAGACUUAACAACAAAAG^ GU A C - C - AAAAAGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Lgi-Mir-10-P5_5p |
mirBase accession | None |
Sequence |
0- UUACCCUGUAGUACCGAGCAAGUG -24
Get sequence
|
Star sequence |
Lgi-Mir-10-P5_3p* (predicted) |
mirBase accession | None |
Sequence |
41- CUGUUCGCUACUGGGGGUCAAA -63
Get sequence
|