MirGeneDB ID | Lpo-Mir-22-P2c |
Family name |
MIR-22 (all species) |
Seed |
AGCUGCC |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-22-P2a
Lpo-Mir-22-P2b
Lpo-Mir-22-P2d
|
Orthologues |
Aae-Mir-22-P2
Asu-Mir-22-P2
Bge-Mir-22-P2
Cbr-Mir-22-P2-v1
Cbr-Mir-22-P2-v2
Cel-Mir-22-P2
Cgi-Mir-22-P2
Csc-Mir-22-P2
Cte-Mir-22-P2
Dan-Mir-22-P2
Dma-Mir-22-P2
Dme-Mir-22-P2
Dmo-Mir-22-P2
Dpu-Mir-22-P2
Dsi-Mir-22-P2
Dya-Mir-22-P2
Esc-Mir-22-P2
Hme-Mir-22-P2
Isc-Mir-22-P2
Lan-Mir-22-P2
Lgi-Mir-22-P2
Npo-Mir-22-P2
Ovu-Mir-22-P2
Pfl-Mir-22-o2
Pmi-Mir-22-o2
Sko-Mir-22-o2
Spu-Mir-22-o2
Tca-Mir-22-P2-v1
Tca-Mir-22-P2-v2
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013666188.1: 65508-65566 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAUUCUACGAGAUGUGGACCCUUCCAGUGUAGUCCUUCAUUGGGGGUGCUUGCUGCCUUUGCUAGGCGAGCUGCCCAGUGAAGGGCUGUUCUGUCGGGGAAUGGUCAACAAUAUAUUCU
Get precursor sequence
|
Structure | 10 20 30 40 50
UAUUCUACGAGAUGUGGA--| UC UG GGU UGCCU
CCCU CAG UAGUCCUUCAUUGGG GCUUGC U
GGGG GUC GUCGGGAAGUGACCC CGAGCG U
UCUUAUAUAACAACUGGUAA^ CU UU GU- GAUCG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Lpo-Mir-22-P2c_5p* |
mirBase accession | None |
Sequence |
0- AGUCCUUCAUUGGGGGUGCUUGC -23
Get sequence
|
Mature sequence |
Lpo-Mir-22-P2c_3p |
mirBase accession | None |
Sequence |
37- GAGCUGCCCAGUGAAGGGCUGU -59
Get sequence
|