MirGeneDB ID | Lpo-Mir-276-P9 |
Family name |
MIR-276 (all species) |
Seed |
AGGAACU |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-276-P3
Lpo-Mir-276-P4
Lpo-Mir-276-P5
Lpo-Mir-276-P6
Lpo-Mir-276-P7
Lpo-Mir-276-P8
|
Orthologues |
Bge-Mir-276
Dma-Mir-276
Dpu-Mir-276
Hme-Mir-276
Isc-Mir-276
Tca-Mir-276
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Arthropoda
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013667836.1: 99097-99154 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGAGGUACAGAAGAUCGGUUGGUUACCGAGAGCGAGGUAUGGAGUCCUUACUGUGAUCACAGAAGGUAGGAACUUCUUACCAUGCUCGCGAUAAUUACUAACCUUACAACGUUACUGC
Get precursor sequence
|
Structure | 10 20 30 40 50
GGAGGUACAGAAGAUCGGU--| C A A U C GUGAU
UGGUUA CG GAGCG GGUA GGAGU CUUACU C
AUUAAU GC CUCGU CCAU CUUCA GGAUGG A
CGUCAUUGCAACAUUCCAAUC^ A G A U A AAGAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Star sequence |
Lpo-Mir-276-P9_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGCGAGGUAUGGAGUCCUUACU -22
Get sequence
|
Mature sequence |
Lpo-Mir-276-P9_3p |
mirBase accession | None |
Sequence |
36- UAGGAACUUCUUACCAUGCUCG -58
Get sequence
|