MirGeneDB ID | Obi-Novel-6 |
Family name |
CEP-NOVEL-6 (all species) |
Seed |
GAACCAU |
Species |
California two-spot octopus (Octopus bimaculoides) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Esc-Novel-6
Npo-Novel-6
Ovu-Novel-6
|
Node of Origin (locus) |
Cephalopoda
|
Node of Origin (family) |
Cephalopoda
|
Genome context (PRJNA270931_OBI) |
KQ421281: 361550-361609 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUCAGUGGCCGGAUAACAGCCAUCAUGUGGUGAACCAUGGUUAAUGAACAUUGAUUACUUACUUUCCAAUGGUCUUGACCAUGAUUUACCUUAUGAGAGUAAAACUGAUCUCACGACAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCAGUGGCCGGAUAACA--| CA U C U A AUUACU
GC UCAUG GGUGAA CAUGGUUAA GA CAUUG \
UG AGUAU CCAUUU GUACCAGUU CU GUAAC U
AAACAGCACUCUAGUCAAAA^ AG U A - G CUUUCA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Obi-Novel-6_5p |
mirBase accession | None |
Sequence |
0- UGAACCAUGGUUAAUGAACAUUG -23
Get sequence
|
Star sequence |
Obi-Novel-6_3p* |
mirBase accession | None |
Sequence |
38- AUGGUCUUGACCAUGAUUUACC -60
Get sequence
|