MirGeneDB ID | Sha-Mir-34-P3b |
Family name |
MIR-34 (all species) |
Seed |
GGCAGUG |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
|
Paralogues |
Sha-Mir-34-P1
Sha-Mir-34-P2a
Sha-Mir-34-P2b
Sha-Mir-34-P3c
Sha-Mir-34-P3d
|
Orthologues |
Aae-Mir-34
Ami-Mir-34-P3b
Asu-Mir-34
Bge-Mir-34
Bta-Mir-34-P3b
Cbr-Mir-34
Cel-Mir-34
Cfa-Mir-34-P3b
Cgi-Mir-34
Cin-Mir-34
Cli-Mir-34-P3b
Cmi-Mir-34-P3b
Cpi-Mir-34-P3b
Cte-Mir-34
Dan-Mir-34
Dma-Mir-34
Dme-Mir-34
Dmo-Mir-34
Dpu-Mir-34
Dsi-Mir-34
Dya-Mir-34
Efe-Mir-34
Esc-Mir-34
Ete-Mir-34-P3b
Gga-Mir-34-P3b
Gja-Mir-34-P3b
Hsa-Mir-34-P3b
Isc-Mir-34
Lch-Mir-34-P3b
Lgi-Mir-34
Loc-Mir-34-P3b
Mdo-Mir-34-P3b
Mml-Mir-34-P3b
Mmu-Mir-34-P3b
Npo-Mir-34
Oan-Mir-34-P3b
Obi-Mir-34
Ocu-Mir-34-P3b
Ovu-Mir-34
Pbv-Mir-34-P3b
Pfl-Mir-34
Pma-Mir-34-P3
Pmi-Mir-34
Rno-Mir-34-P3b
Sko-Mir-34
Spt-Mir-34-P3b
Spu-Mir-34
Sto-Mir-34-P3b
Tca-Mir-34
Xbo-Mir-34
Xla-Mir-34-P3b1
Xla-Mir-34-P3b2
Xtr-Mir-34-P3b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (DEVIL_add) |
GL841771.1: 107667-107727 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGUGGGCUGACCCCAUUUCCUGGGUCAGGUAGGCAGUGUGCUGUAAGCUGGCUGCUUGGGUUCAAUUGAGCAGUCAGGACUAGCCUGCCACUUGCUCCUGGACUGGUUCAUCUUUUUCAGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGUGGGCUGACCCCAUU--| U GU A UGU UAAG GCUUGGGU
UCC GG CAGGU GGCAG GCUG CUGGCU U
AGG CC GUUCA CCGUC CGAU GACUGA C
UGACUUUUUCUACUUGGUC^ U UC - --- CAG- CGAGUUAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | This is a Group 2 in human according to Kim et al but because there is a templated 3' U it is not possible according to read data to classify it as such in other taxa although the secondary structure is consistent with this categorization. |
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Sha-Mir-34-P3b_5p |
mirBase accession | None |
Sequence |
0- AGGCAGUGUGCUGUAAGCUGGCU -23
Get sequence
|
Star sequence |
Sha-Mir-34-P3b_3p* |
mirBase accession | None |
Sequence |
40- CAGUCAGGACUAGCCUGCCAC -61
Get sequence
|