MirGeneDB ID | Sha-Novel-9 |
Family name |
SHA-NOVEL-9 (all species) |
Seed |
ACUCACA |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
S. harrisii
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Node of Origin (family) |
S. harrisii
|
Genome context (DEVIL_add) |
GL857025.1: 661380-661436 [-]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
GAAGACUGAAUUCCAGUAACUGGAACAGUUAACUCACAUUAGGCAACCUGCUUCAGCUCGCCCAGCAAGUUGGCUAAUGUGAGUUCACUGAUCCGGUUUCCUCCUCUGUGGAAGAGA
Get precursor sequence
|
Structure | 10 20 30 40 50
GAAGACUGAAUUCCAGU--| A U G C UCAGC
AACUGGA CAGU AACUCACAUUAG CAAC UGCU \
UUGGCCU GUCA UUGAGUGUAAUC GUUG ACGA U
AGAGAAGGUGUCUCCUCCU^ A C G A CCCGC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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Mature sequence |
Sha-Novel-9_5p |
mirBase accession | None |
Sequence |
0- AACUCACAUUAGGCAACCUGCU -22
Get sequence
|
Co-mature sequence |
Sha-Novel-9_3p |
mirBase accession | None |
Sequence |
35- CAAGUUGGCUAAUGUGAGUUCA -57
Get sequence
|