MirGeneDB ID | Sme-Mir-184-P26 |
Family name |
MIR-184 (all species) |
Seed |
ACGGAGG |
Species |
Freshwater planarian (Schmidtea mediterranea) |
MiRBase ID |
sme-mir-184
|
Paralogues |
Sme-Mir-184-P27
|
Orthologues |
Aae-Mir-184
Aca-Mir-184
Ami-Mir-184
Asu-Mir-184
Bfl-Mir-184
Bge-Mir-184
Bla-Mir-184
Bpl-Mir-184
Bta-Mir-184
Cfa-Mir-184
Cin-Mir-184
Cli-Mir-184
Cmi-Mir-184
Cpi-Mir-184
Cpo-Mir-184
Dan-Mir-184
Dma-Mir-184
Dme-Mir-184
Dmo-Mir-184
Dno-Mir-184
Dpu-Mir-184
Dsi-Mir-184
Dya-Mir-184
Esc-Mir-184
Ete-Mir-184
Gga-Mir-184
Gja-Mir-184
Hme-Mir-184
Hsa-Mir-184
Isc-Mir-184
Lan-Mir-184
Lch-Mir-184
Loc-Mir-184
Mdo-Mir-184
Mml-Mir-184
Mmu-Mir-184
Npo-Mir-184
Oan-Mir-184
Obi-Mir-184-P26
Ocu-Mir-184
Ovu-Mir-184-P26
Pbv-Mir-184
Pfl-Mir-184
Pma-Mir-184
Pmi-Mir-184
Rno-Mir-184
Sha-Mir-184
Sko-Mir-184
Spt-Mir-184
Spu-Mir-184
Sto-Mir-184
Tca-Mir-184
Tgu-Mir-184
Xtr-Mir-184
|
Node of Origin (locus) |
S. mediterranea
|
Node of Origin (family) |
Bilateria
|
Genome context (Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000012_dd_Smes_g4_12: 7152795-7152862 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCAAAAUGUACAAUUAAUGAUUUUCAUUAACUCCUUUGUGUAUCUCCGUUUCACAUUUAUUAUAUCAUUUAUACUGGACGGAGGUUUGCUAAGGAAUAUUUGAAAAUUGCGAACUACAAAUAUUAUCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCAAAAUGUACAAUUAAU--| UUAAC U U CACAUUUAUUA
GAUUUUCA UCCUU GUG AUCUCCGUUU U
UUAAAAGU AGGAA CGU UGGAGGCAGG A
ACUAUUAUAAACAUCAAGCG^ UUAUA U U UCAUAUUUACU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Ne |
Wh |
Wh |
Wh |
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Star sequence |
Sme-Mir-184-P26_5p* |
mirBase accession | MIMAT0012116 |
Sequence |
0- CUCCUUUGUGUAUCUCCGUUUC -22
Get sequence
|
Mature sequence |
Sme-Mir-184-P26_3p |
mirBase accession | MIMAT0004000 |
Sequence |
46- GACGGAGGUUUGCUAAGGAAUA -68
Get sequence
|