MirGeneDB ID | Sme-Mir-315 |
Family name |
MIR-315 (all species) |
Seed |
UUUGAUU |
Species |
Freshwater planarian (Schmidtea mediterranea) |
MiRBase ID |
sme-mir-315
|
Paralogues |
|
Orthologues |
Aae-Mir-315
Bge-Mir-315
Bpl-Mir-315
Cbr-Mir-315
Cel-Mir-315
Cgi-Mir-315-v1
Cgi-Mir-315-v2
Csc-Mir-315
Cte-Mir-315
Dan-Mir-315
Dma-Mir-315
Dme-Mir-315
Dmo-Mir-315
Dpu-Mir-315
Dsi-Mir-315
Dya-Mir-315
Efe-Mir-315
Esc-Mir-315
Isc-Mir-315
Lan-Mir-315
Lgi-Mir-315
Lpo-Mir-315-P3
Lpo-Mir-315-P4
Lpo-Mir-315-P5
Lpo-Mir-315-P6-v1
Lpo-Mir-315-P6-v2
Npo-Mir-315
Obi-Mir-315
Ovu-Mir-315
Pfl-Mir-315
Pma-Mir-315
Sko-Mir-315
Tca-Mir-315
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
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Genome context (Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000017_dd_Smes_g4_17: 5952889-5952952 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAUUGACACAGUUGAGCGAGGCUUAUAGAAUUUUGAUUGUUGCUCUGAGAGUUAAUAUAAUUUCAAUGAUAACUGUCUAACAACCAUCAAAUUUCAAAGCGAUGCUUGUCAUCGGGUCCCCGAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAUUGACACAGUUGAGCGAG----| AUA U U CUCU G AAUAUAAU
GCUU GAA UUUGAU GUUG GA AGUU \
CGAA CUU AAACUA CAAC CU UCAA U
AAGCCCCUGGGCUACUGUUCGUAG^ A-- U C AAU- G UAGUAACU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Ne |
Wh |
Wh |
Wh |
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Mature sequence |
Sme-Mir-315_5p |
mirBase accession | MIMAT0011282 |
Sequence |
0- UUUUGAUUGUUGCUCUGAGAGUU -23
Get sequence
|
Star sequence |
Sme-Mir-315_3p* |
mirBase accession | MIMAT0012167 |
Sequence |
42- CUGUCUAACAACCAUCAAAUUU -64
Get sequence
|