MirGeneDB ID | Sme-Mir-8-P15 |
Family name |
MIR-8 (all species) |
Seed |
AAUACUG |
Species |
Freshwater planarian (Schmidtea mediterranea) |
MiRBase ID |
sme-mir-8b
|
Paralogues |
Sme-Mir-8-P14
|
Orthologues |
Aae-Mir-8
Asu-Mir-8
Bge-Mir-8
Bpl-Mir-8
Cbr-Mir-8
Cel-Mir-8
Cgi-Mir-8
Csc-Mir-8
Cte-Mir-8
Dan-Mir-8
Dma-Mir-8
Dme-Mir-8
Dmo-Mir-8
Dpu-Mir-8
Dsi-Mir-8
Dya-Mir-8
Esc-Mir-8
Hme-Mir-8
Isc-Mir-8
Lan-Mir-8
Lgi-Mir-8
Npo-Mir-8
Obi-Mir-8
Ovu-Mir-8
Pfl-Mir-8
Pmi-Mir-8
Sko-Mir-8
Spu-Mir-8
Tca-Mir-8
|
Node of Origin (locus) |
S. mediterranea
|
Node of Origin (family) |
Bilateria
|
Genome context (Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000077_dd_Smes_g4_77: 1841779-1841834 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUGUUUUAUUGCAUUCAUUCUAAUAAUUUGCUUCUUACUUGAUGGUAAGAGACAGAUUUUUGUUUAAUACUGUCAGGUAAGAAUACUGACUAUUAGAAUUAUCUUCGAUUGUUUGU
Get precursor sequence
|
Structure | 10 20 30 40 50
AUGUUUUAUUGCAUUCA- A UGC-| AG CAGA
UUCUAAUA UU UUCUUACUUGAUGGUA AGA U
AAGAUUAU AG AAGAAUGGACUGUCAU UUU U
UGUUUGUUAGCUUCUAUU C UCAU^ AA GUUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Ne |
Wh |
Wh |
Wh |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Sme-Mir-8-P15_5p* |
mirBase accession | MIMAT0012139 |
Sequence |
0- CUUCUUACUUGAUGGUAAGAGA -22
Get sequence
|
Mature sequence |
Sme-Mir-8-P15_3p |
mirBase accession | MIMAT0011240 |
Sequence |
34- UAAUACUGUCAGGUAAGAAUAC -56
Get sequence
|