MirGeneDB ID | Spt-Mir-34-P1 |
---|---|
Family name | MIR-34 (all species) |
Seed | GGCAGUG |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | Spt-Mir-34-P2a Spt-Mir-34-P2b Spt-Mir-34-P3b Spt-Mir-34-P3c Spt-Mir-34-P3d |
Orthologues | Aae-Mir-34 Aca-Mir-34-P1 Ami-Mir-34-P1 Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P1 Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P1 Cgi-Mir-34 Cin-Mir-34 Cli-Mir-34-P1 Cmi-Mir-34-P1 Cpi-Mir-34-P1 Cpo-Mir-34-P1 Cte-Mir-34 Dan-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P1 Dpu-Mir-34 Dre-Mir-34-P1 Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P1 Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P1 Gga-Mir-34-P1 Gja-Mir-34-P1 Gmo-Mir-34-P1 Hsa-Mir-34-P1 Isc-Mir-34 Lch-Mir-34-P1 Lgi-Mir-34 Loc-Mir-34-P1 Mal-Mir-34-P1 Mdo-Mir-34-P1 Mml-Mir-34-P1 Mmu-Mir-34-P1 Mun-Mir-34-P1 Npo-Mir-34 Oan-Mir-34-P1 Obi-Mir-34 Ocu-Mir-34-P1 Ovu-Mir-34 Pbv-Mir-34-P1 Pfl-Mir-34 Pma-Mir-34-P1 Pmi-Mir-34 Rno-Mir-34-P1 Sha-Mir-34-P1 Sko-Mir-34 Spu-Mir-34 Sto-Mir-34-P1 Tca-Mir-34 Tgu-Mir-34-P1 Tni-Mir-34-P1 Xbo-Mir-34 Xla-Mir-34-P1a Xla-Mir-34-P1b Xtr-Mir-34-P1 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Bilateria |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01009251.1: 4755950-4756015 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CUCAACUGAAGCCAACUGUGAGUGUUUCUUUGGCAGUGUCUUAGCUGGUUGUUGUGAGCAAUAGUAAAGGAAGCAAUCAGCAAGUAUACUGCCCUAGAAGUGCUGCACAUUUGUUAGGCUCACUUCGet precursor sequence |
Structure | 10 20 30 40 50 60 CUCAACUGAAGCCAACU- - UG UU -| A GUGAGCAA GUG AG UUUCU GGCAGUGU CUU GCUGGUUGUU U CAC UC GAAGA CCGUCAUA GAA CGACUAACGA A CUUCACUCGGAUUGUUUA G GU UC U^ - AGGAAAUG 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), UGUG in loop |
Mature sequence | Spt-Mir-34-P1_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGGCAGUGUCUUAGCUGGUUGUU -23
Get sequence
|
Star sequence | Spt-Mir-34-P1_3p* (predicted) |
mirBase accession | None |
Sequence |
43- CAAUCAGCAAGUAUACUGCCCUA -66
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|