MirGeneDB ID | Spt-Mir-7-P4 |
---|---|
Family name | MIR-7 (all species) |
Seed | GGAAGAC |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | Spt-Mir-7-P1 Spt-Mir-7-P2 Spt-Mir-7-P3 |
Orthologues | Aae-Mir-7 Aca-Mir-7-P4 Ami-Mir-7-P4 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Bta-Mir-7-P4 Cfa-Mir-7-P4 Cgi-Mir-7 Cin-Mir-7 Cli-Mir-7-P4 Cmi-Mir-7-P4 Cpi-Mir-7-P4 Cpo-Mir-7-P4 Cte-Mir-7 Dan-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P4 Dre-Mir-7-P4b Dsi-Mir-7 Dya-Mir-7 Esc-Mir-7 Ete-Mir-7-P4 Gga-Mir-7-P4 Gja-Mir-7-P4 Gmo-Mir-7-P4a Hme-Mir-7 Hsa-Mir-7-P4 Isc-Mir-7 Lan-Mir-7 Lch-Mir-7-P4 Lgi-Mir-7 Loc-Mir-7-P4 Loc-Mir-7-P4-as Lpo-Mir-7 Mal-Mir-7-P4a Mdo-Mir-7-P4 Mml-Mir-7-P4 Mmu-Mir-7-P4 Mun-Mir-7-P4 Npo-Mir-7 Obi-Mir-7 Ocu-Mir-7-P4 Ovu-Mir-7 Pbv-Mir-7-P4 Pfl-Mir-7 Pma-Mir-7-o4 Pmi-Mir-7 Rno-Mir-7-P4 Sha-Mir-7-P4 Sko-Mir-7 Spu-Mir-7 Sto-Mir-7-P4 Tca-Mir-7 Tgu-Mir-7-P4 Xbo-Mir-7 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Bilateria |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01008752.1: 4085978-4086040 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CUUGCUGCUCAUUCCUGGUCUGGUUCUGCCUGGAAGACUAGUGAUUUUGUUGUUCUGACUUUGAAAGAUGACAACAAAUCACAGCCUGCCAUCCAGCACAGACCCCAGGCCGCACGUCCAGCCGet precursor sequence |
Structure | 10 20 30 40 50 60 CUUGCUGCUCAUUCCUG---| GUU CC A A A U CUGACUU GUCUG CUG UGG AG CU GUGAUUU GUUGUU \ CAGAC GAC ACC UC GA CACUAAA CAACAG U CCGACCUGCACGCCGGACCC^ AC- CU G C - - UAGAAAG 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Mature sequence | Spt-Mir-7-P4_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGGAAGACUAGUGAUUUUGUUGUU -24
Get sequence
|
Star sequence | Spt-Mir-7-P4_3p* (predicted) |
mirBase accession | None |
Sequence |
41- CAACAAAUCACAGCCUGCCAUC -63
Get sequence
|