MirGeneDB ID | Sto-Mir-8-P1a |
Family name |
MIR-8 (all species) |
Seed |
AAUACUG |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-8-P2a
Sto-Mir-8-P3a
|
Orthologues |
Aae-Mir-8
Aca-Mir-8-P1a
Ami-Mir-8-P1a
Asu-Mir-8
Bfl-Mir-8-P1-v1
Bfl-Mir-8-P1-v2
Bge-Mir-8
Bla-Mir-8-P1
Bpl-Mir-8
Bta-Mir-8-P1a
Cbr-Mir-8
Cel-Mir-8
Cfa-Mir-8-P1a
Cgi-Mir-8
Cin-Mir-8-P1
Cli-Mir-8-P1a
Cmi-Mir-8-P1a
Cpi-Mir-8-P1a
Cpo-Mir-8-P1a
Csc-Mir-8
Cte-Mir-8
Dan-Mir-8
Dma-Mir-8
Dme-Mir-8
Dmo-Mir-8
Dno-Mir-8-P1a
Dpu-Mir-8
Dre-Mir-8-P1a
Dsi-Mir-8
Dya-Mir-8
Esc-Mir-8
Ete-Mir-8-P1a
Gga-Mir-8-P1a
Gja-Mir-8-P1a
Gmo-Mir-8-P1a
Hme-Mir-8
Hsa-Mir-8-P1a
Isc-Mir-8
Lan-Mir-8
Lch-Mir-8-P1a
Lgi-Mir-8
Loc-Mir-8-P1a
Mal-Mir-8-P1a
Mdo-Mir-8-P1a
Mml-Mir-8-P1a
Mmu-Mir-8-P1a
Mun-Mir-8-P1a
Npo-Mir-8
Oan-Mir-8-P1a
Obi-Mir-8
Ocu-Mir-8-P1a
Ovu-Mir-8
Pbv-Mir-8-P1a
Pfl-Mir-8
Pmi-Mir-8
Rno-Mir-8-P1a
Sha-Mir-8-P1a
Sko-Mir-8
Spt-Mir-8-P1a
Spu-Mir-8
Tca-Mir-8
Tgu-Mir-8-P1a
Tni-Mir-8-P1a
Xla-Mir-8-P1a1
Xla-Mir-8-P1a2
Xtr-Mir-8-P1a
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_003427355_STO_add) |
BFAA01000031.1: 1278868-1278926 [+]
|
Precursor (pre-Mir +30nt flank) |
AACAAUGAAAGAUUUUUGGGGAGGUAUUGUCAUCUUACUGGGCAGCAUUGGAUGUAACUGGUAUUCUAAUACUGCCUGGUAAUGAUGAUGAUGGCUUUCUGAUUUCAUCGGAGAAGAAU
Get precursor sequence
|
Structure | 10 20 30 40 50
AACAAUGAAAGAUUUUU-- GG G UG -| UG C UGUAA
GG AG UAU UCAUC UUAC GGCAG AUUGGA C
UC UC GUA AGUAG AAUG CCGUC UAAUCU U
UAAGAAGAGGCUACUUUAG UU G GU U^ GU A UAUGG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut +1 on both arms. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Sto-Mir-8-P1a_5p* |
mirBase accession | None |
Sequence |
0- CAUCUUACUGGGCAGCAUUGGA -22
Get sequence
|
Mature sequence |
Sto-Mir-8-P1a_3p |
mirBase accession | None |
Sequence |
36- UAAUACUGCCUGGUAAUGAUGAU -59
Get sequence
|