MirGeneDB ID | Tni-Mir-153-P2b |
Family name |
MIR-153 (all species) |
Seed |
UGCAUAG |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
|
Paralogues |
Tni-Mir-153-P1b
Tni-Mir-153-P2a
|
Orthologues |
Aca-Mir-153-P2
Ami-Mir-153-P2
Asu-Mir-153
Bfl-Mir-153
Bla-Mir-153
Bpl-Mir-153
Bta-Mir-153-P2
Cfa-Mir-153-P2
Cgi-Mir-153
Cin-Mir-153
Cli-Mir-153-P2
Cmi-Mir-153-P2
Cpi-Mir-153-P2
Cte-Mir-153
Dma-Mir-153
Dno-Mir-153-P2
Dpu-Mir-153
Dre-Mir-153-P2b
Gga-Mir-153-P2
Gja-Mir-153-P2
Hsa-Mir-153-P2
Isc-Mir-153
Lan-Mir-153
Lch-Mir-153-P2
Lgi-Mir-153
Loc-Mir-153-P2
Mal-Mir-153-P2b
Mdo-Mir-153-P2
Mml-Mir-153-P2
Mun-Mir-153-P2
Npo-Mir-153
Oan-Mir-153-P2
Obi-Mir-153
Ovu-Mir-153
Pbv-Mir-153-P2
Pfl-Mir-153
Pma-Mir-153-o2
Pmi-Mir-153
Sha-Mir-153-P2
Sko-Mir-153
Sme-Mir-153
Spt-Mir-153-P2
Spu-Mir-153
Sto-Mir-153-P2
Tgu-Mir-153-P2
Xbo-Mir-153
Xtr-Mir-153-P2
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
3: 991154-991212 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGCGGUUAGAUGUAAACACAUCUUUCUGUGUCAUUCUUGUGGUUUGCAGCUAGUAAUCUGGCUCCAGUUGCAUAGUCACAAAAAUGAGCACGGACUGAUGUGGCUGCAGCGGGAGCCCU
Get precursor sequence
|
Structure | 10 20 30 40 50
AGCGGUUAGAUGUAAAC- UU - C GU -| AGUAAU
ACAUC UCUGUG UCAUU UUGUG U UGCAGCU C
UGUAG AGGCAC AGUAA AACAC A ACGUUGA U
UCCCGAGGGCGACGUCGG UC G A UG U^ CCUCGG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Tni-Mir-153-P2b_5p* |
mirBase accession | None |
Sequence |
0- UCAUUCUUGUGGUUUGCAGCU -21
Get sequence
|
Mature sequence |
Tni-Mir-153-P2b_3p |
mirBase accession | None |
Sequence |
37- UUGCAUAGUCACAAAAAUGAGC -59
Get sequence
|