MirGeneDB 3.0

24 microRNA genes with node of origin C. porcellus

						Sort by genome coordinates								Motifs
MirGeneDB ID ▲	MiRBase ID	Family	Seed	5p accession	3p accession	Chromosome	Start	End	Strand	Node of origin (locus)	Node of origin (family)	Iso­miR	3' NTU	UG	UGUG	CNNC
Cpo-Mir-430-o28	cpo-mir-526	MIR-430	AAGUGCG	MIMAT0047459	MIMAT0047460	scaffold_70	3095374	3095431	-	C. porcellus	Vertebrata		No		1	1
Cpo-Mir-506-P2a1	cpo-mir-507a	MIR-506	CUGGCAC	MIMAT0047315	MIMAT0047316	scaffold_84	2762224	2762281	+	C. porcellus	Eutheria		No
Cpo-Mir-506-P2a2	cpo-mir-507b	MIR-506	UUGGCAC	MIMAT0047317	MIMAT0047318	scaffold_84	2763265	2763322	+	C. porcellus	Eutheria		No			1
Cpo-Mir-506-P26a	cpo-mir-12075	MIR-506	AACUCCA	MIMAT0047451	MIMAT0047452	scaffold_84	2702886	2702945	+	C. porcellus	Eutheria		No		1	1
Cpo-Mir-506-P26b	cpo-mir-509d	MIR-506	GAUUGCA	MIMAT0047327	MIMAT0047328	scaffold_84	2715444	2715500	+	C. porcellus	Eutheria		No			1
Cpo-Mir-506-P26c	cpo-mir-509f	MIR-506	UCCCCAA	MIMAT0047333	MIMAT0047334	scaffold_84	2722022	2722078	+	C. porcellus	Eutheria		No	1		1
Cpo-Mir-506-P26d	cpo-mir-509e	MIR-506	GAUUGCA	MIMAT0047329	MIMAT0047330	scaffold_84	2725364	2725420	+	C. porcellus	Eutheria		No	1
Cpo-Mir-506-P26e	cpo-mir-509a	MIR-506	GACUGAA	MIMAT0047321	MIMAT0047322	scaffold_84	2739521	2739577	+	C. porcellus	Eutheria		No	1	1	1
Cpo-Mir-506-P26f	cpo-mir-509b	MIR-506	ACUUCAC	MIMAT0047323	MIMAT0047324	scaffold_84	2748262	2748318	+	C. porcellus	Eutheria		No	1		1
Cpo-Mir-506-P26g	cpo-mir-509c	MIR-506	AGAAACC	MIMAT0047325	MIMAT0047326	scaffold_84	2752734	2752794	+	C. porcellus	Eutheria		No
Cpo-Mir-506-P27a	cpo-mir-892	MIR-506	ACCAAGG	MIMAT0047231	MIMAT0047232	scaffold_84	3931993	3932049	+	C. porcellus	Eutheria		No	1		1
Cpo-Mir-506-P27b	None	MIR-506	ACCAAGA	None	None	scaffold_84	3932651	3932706	+	C. porcellus	Eutheria		No	1
Cpo-Mir-506-P27c	cpo-mir-12077	MIR-506	ACUGAGG	MIMAT0047455	MIMAT0047456	scaffold_84	3933561	3933617	+	C. porcellus	Eutheria		No	1
Cpo-Mir-12072	cpo-mir-12072	MIR-12072	GGGCUGC	MIMAT0047445	MIMAT0047446	scaffold_17	14952640	14952698	-	C. porcellus	C. porcellus		No	1
Cpo-Mir-12073	cpo-mir-12073	MIR-12073	UCAGAGU	MIMAT0047447	MIMAT0047448	scaffold_111	952329	952402	+	C. porcellus	C. porcellus		No
Cpo-Mir-12074	cpo-mir-12074	MIR-12074	CUGAAAU	MIMAT0047449	MIMAT0047450	scaffold_143	1245387	1245446	+	C. porcellus	C. porcellus		No			1
Cpo-Mir-12076	cpo-mir-12076	MIR-12076	CUGGCCC	MIMAT0047453	MIMAT0047454	scaffold_3	1597129	1597188	+	C. porcellus	C. porcellus		No	1
Cpo-Mir-12078	cpo-mir-12078	MIR-12078	GGUGGAA	MIMAT0047457	MIMAT0047458	scaffold_41	4308585	4308650	+	C. porcellus	C. porcellus		No			1
Cpo-Mir-12079	cpo-mir-12079	MIR-12079	CAUGGGA	MIMAT0047461	MIMAT0047462	scaffold_25	8963913	8963973	-	C. porcellus	C. porcellus		No
Cpo-Mir-12080	cpo-mir-12080	MIR-12080	CGCUCUU	MIMAT0047463	MIMAT0047464	scaffold_1	22962766	22962822	+	C. porcellus	C. porcellus		No		1
Cpo-Mir-12081	cpo-mir-12081	MIR-12081	GAGCUAA	MIMAT0047465	MIMAT0047466	scaffold_25	8798446	8798504	-	C. porcellus	C. porcellus		No
Cpo-Mir-12082	cpo-mir-12082	MIR-12082	AGCCAAC	MIMAT0047467	MIMAT0047468	scaffold_7	45795923	45795982	+	C. porcellus	C. porcellus		No
Cpo-Mir-12083	cpo-mir-12083	MIR-12083	UCCAUCU	MIMAT0047469	MIMAT0047470	scaffold_109	302769	302825	-	C. porcellus	C. porcellus		No
Cpo-Mir-12084	cpo-mir-12084	MIR-12084	GCCUGGG	MIMAT0047471	MIMAT0047472	scaffold_65	1244778	1244837	+	C. porcellus	C. porcellus		No

(red - mature/co-mature, blue - star)

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