| MirGeneDB ID | Aqu-Mir-2014-P1 |
|---|
| Family name |
MIR-2014 (all species) |
|---|
| Seed |
GCCAAAC |
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| Species |
Amphimedon (Amphimedon queenslandica) |
|---|
| MiRBase ID |
aqu-mir-2014
|
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| Paralogues |
Aqu-Mir-2014-P2
|
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| Orthologues |
Emu-Mir-2014
|
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| Node of Origin (locus) |
A. queenslandica
|
|---|
| Node of Origin (family) |
Demospongiae
|
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Genome context
(GCF_000090795.1_v1.0_SPONGE) |
NW_003546273.1: 457378-457507 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUCGCUUCGCUUCUUGCUGCUGUGGUAUUGUAGGUCGGGCCUGGGGGGCAGGUGGAAGGAAUGGCGGCCAAAAGCGGCAAGGGAGAGCGAUGGUUGCACUGCACUAGUUCUCUUUGCUGCUGCGGGCUGCUAACCUCCUGCCAAACAAGUCCGAUCUACAAGACCACGGCUGCUGUAGCUCCAUAUUGUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70 80 90
GUCGCUUCGCUUCUUGCU--| A C GGG UGGAAGGAAUGGCGGCCAAAAGCGGCAAGGGAGAGCGAUGG
GCUGUGGU UUGUAGGUCGGGC UG GGCAGG U
CGGCACCA AACAUCUAGCCUG AC CCGUCC U
AUGUUAUACCUCGAUGUCGU^ G A AAA UCCAAUCGUCGGGCGUCGUCGUUUCUCUUGAUCACGUCACG
. 180 170 160 150 140 130 120 110 100 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Star sequence |
Aqu-Mir-2014-P1_5p* |
| mirBase accession | MIMAT0009686 |
|---|
| Sequence |
0- UAGGUCGGGCCUGGGGGGCAGG -22
Get sequence
|
|---|
| Mature sequence |
Aqu-Mir-2014-P1_3p |
| mirBase accession | MIMAT0009687 |
|---|
| Sequence |
108- UGCCAAACAAGUCCGAUCUACA -130
Get sequence
|
|---|
