MirGeneDB ID | Bge-Novel-18 |
Family name |
BGE-NOVEL-18 (all species) |
Seed |
AUAUAAA |
Species |
Cockroach (Blattella germanica) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
B. germanica
|
Node of Origin (family) |
B. germanica
|
Genome context (Bger_2.0) |
KZ616140.1: 57073-57133 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAAUGUAAUAAAAUUAGGUACAGUUGGUUUCAUAUAAAUUGUCUGCGACACUCAUUGAAUUACUACGGGUGUCGCGGUCAUUUUAUUUGGAAUCAACUAUACUUACCUACAUUGGUGACAU
Get precursor sequence
|
Structure | 10 20 30 40 50
UAAUGUAAUAAAAUUAG--| C U U U CAUUGAA
GUA AGUUGGUUUCA AUAAA UG CUGCGACACU \
CAU UCAACUAAGGU UAUUU AC GGCGCUGUGG U
UACAGUGGUUACAUCCAUU^ A U U U GCAUCAU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Ad |
Ad |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
Co |
Co |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
No |
No |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Bge-Novel-18_5p |
mirBase accession | None |
Sequence |
0- CAUAUAAAUUGUCUGCGACACU -22
Get sequence
|
Co-mature sequence |
Bge-Novel-18_3p |
mirBase accession | None |
Sequence |
39- UGUCGCGGUCAUUUUAUUUGGA -61
Get sequence
|