MirGeneDB ID | Bge-Novel-5 |
Family name |
BGE-NOVEL-5 (all species) |
Seed |
GGACUUC |
Species |
Cockroach (Blattella germanica) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
B. germanica
|
Node of Origin (family) |
B. germanica
|
Genome context (Bger_2.0) |
KZ614421.1: 901262-901321 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAGCCCUCGUCAAGGGUUUUAAAAAGACCAUGGACUUCAUCCUCAGGGAUUCGUUGUUCUGCUGUAGAACUCUAGAAGAUGAAGGCCAUGGCCCAUUGAUAGCGCUCGAGGAACGAAUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
CAGCCCUCGUCAAGGGUUUUAAAAAGA-- A C -| A GUUGUU
CCAUGG CUUCAUC UC AGGG UUC C
GGUACC GAAGUAG AG UCUC AAG U
UUUAAGCAAGGAGCUCGCGAUAGUUACCC G A A^ - AUGUCG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Ad |
Ad |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
Co |
Co |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
No |
No |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Bge-Novel-5_5p |
mirBase accession | None |
Sequence |
0- UGGACUUCAUCCUCAGGGAUUC -22
Get sequence
|
Star sequence |
Bge-Novel-5_3p* |
mirBase accession | None |
Sequence |
38- ACUCUAGAAGAUGAAGGCCAUG -60
Get sequence
|