MirGeneDB 2.1

MirGeneDB ID

Cin-Mir-196

Family name MIR-196 (all species)
Seed AGGUAGU
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-196
Paralogues
Orthologues Aca-Mir-196-P1  Aca-Mir-196-P3  Aca-Mir-196-P4  Ami-Mir-196-P1  Ami-Mir-196-P3  Ami-Mir-196-P4  Bta-Mir-196-P1  Bta-Mir-196-P3  Bta-Mir-196-P4  Cfa-Mir-196-P1  Cfa-Mir-196-P3  Cfa-Mir-196-P4  Cli-Mir-196-P1  Cli-Mir-196-P3  Cli-Mir-196-P4  Cmi-Mir-196-P1  Cmi-Mir-196-P3  Cmi-Mir-196-P4  Cpi-Mir-196-P1  Cpi-Mir-196-P3  Cpi-Mir-196-P4  Cpo-Mir-196-P1  Cpo-Mir-196-P3  Cpo-Mir-196-P4  Dno-Mir-196-P1  Dno-Mir-196-P3  Dno-Mir-196-P4  Dre-Mir-196-P1a  Dre-Mir-196-P1b  Dre-Mir-196-P3a  Dre-Mir-196-P4a  Dre-Mir-196-P4b  Ebu-Mir-196-P5  Ebu-Mir-196-P6  Ete-Mir-196-P1  Ete-Mir-196-P4  Gga-Mir-196-P1  Gga-Mir-196-P3  Gga-Mir-196-P4  Gja-Mir-196-P1  Gja-Mir-196-P3  Gja-Mir-196-P4  Gmo-Mir-196-P1a  Gmo-Mir-196-P1b  Gmo-Mir-196-P4a  Hsa-Mir-196-P1  Hsa-Mir-196-P3  Hsa-Mir-196-P4  Lch-Mir-196-P1  Lch-Mir-196-P3  Lch-Mir-196-P4  Loc-Mir-196-P1  Loc-Mir-196-P3  Loc-Mir-196-P4  Mal-Mir-196-P1a  Mal-Mir-196-P1b  Mal-Mir-196-P3a  Mal-Mir-196-P4a  Mdo-Mir-196-P1  Mdo-Mir-196-P3  Mml-Mir-196-P1  Mml-Mir-196-P3  Mml-Mir-196-P4  Mmu-Mir-196-P1  Mmu-Mir-196-P3  Mmu-Mir-196-P4  Mun-Mir-196-P1  Mun-Mir-196-P4  Oan-Mir-196-P1  Oan-Mir-196-P4  Ocu-Mir-196-P1  Ocu-Mir-196-P3  Ocu-Mir-196-P4  Pbv-Mir-196-P1  Pbv-Mir-196-P3  Pma-Mir-196-o1  Pma-Mir-196-o2  Pma-Mir-196-o3  Rno-Mir-196-P1c  Rno-Mir-196-P1d  Rno-Mir-196-P3  Rno-Mir-196-P4  Sha-Mir-196-P1  Sha-Mir-196-P3  Sha-Mir-196-P4  Spt-Mir-196-P1  Spt-Mir-196-P3  Spt-Mir-196-P4  Sto-Mir-196-P1  Sto-Mir-196-P3  Tgu-Mir-196-P1  Tgu-Mir-196-P4  Tni-Mir-196-P1a  Tni-Mir-196-P1b  Tni-Mir-196-P3a  Tni-Mir-196-P4a1  Tni-Mir-196-P4a2  Tni-Mir-196-P4a3  Xla-Mir-196-P1e  Xla-Mir-196-P1f  Xla-Mir-196-P4c-v1  Xla-Mir-196-P4c-v2  Xla-Mir-196-P4d-v1  Xla-Mir-196-P4d-v2  Xtr-Mir-196-P1  Xtr-Mir-196-P4 
Node of Origin (locus) Olfactores
Node of Origin (family) Olfactores
Genome context
(ci3)
7: 2713377-2713429 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUUCCAAACGAUUUCUCUGUACUCUGUAGUAGGUAGUUUAAAGUUGUGGAGAUUUGGACUCCACAGCUUUAGGCGGCCUGCUAGAAUGUACAGACUCACGCCAAAGAAUAGC
Get precursor sequence
Structure
        10          20        30        40        50      
AAUUCCAAACGAUUUCU--|     UCUG        A                AUU 
                   CUGUAC    UAGUAGGU GUUUAAAGUUGUGGAG   \
                   GACAUG    AUCGUCCG CGGAUUUCGACACCUC   U
CGAUAAGAAACCGCACUCA^     UAAG        G                AGG 
 110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Cr Cr Cr Cr Cr Cr Cr Cr Cr Cr Ga La La
Mature sequence

Cin-Mir-196_5p

mirBase accessionMIMAT0016413
Sequence
0- UAGGUAGUUUAAAGUUGUGGAG -22
Get sequence
Star sequence

Cin-Mir-196_3p* (predicted)

mirBase accessionMIMAT0016414
Sequence
31- CCACAGCUUUAGGCGGCCUGCU -53
Get sequence