MirGeneDB 2.1

MirGeneDB ID

Cin-Mir-4013-P2

Family name MIR-4013 (all species)
Seed AGGCUGC
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4013b
Paralogues Cin-Mir-4013-P1 
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)
HT000174.1: 385914-385966 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAACUGUAUAAUACUAAACUGCGCGUGAACUUACUUGCUUUAACAGUAUGCGUUAUUAUCGUAGGCUGCUAAUGCAAGCUAGUAUUCGCUACAGUACAAACACCACGUCAAGU
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Structure
        10         20         30        40        50      
UAACUGUAUAAUACUAA-    C-|  UGA   UA     U   A    A    UUA 
                  ACUG  GCG   ACU  CUUGC UUA CAGU UGCG   \
                  UGAC  CGC   UGA  GAACG AAU GUCG AUGC   U
UGAACUGCACCACAAACA    AU^  UUA   UC     U   C    G    UAU 
 110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Cr Cr Cr Cr Cr Cr Cr Cr Cr Cr Ga La La
Star sequence

Cin-Mir-4013-P2_5p*

mirBase accessionMIMAT0016516
Sequence
0- UUACUUGCUUUAACAGUAUGCG -22
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Mature sequence

Cin-Mir-4013-P2_3p

mirBase accessionMIMAT0016517
Sequence
31- UAGGCUGCUAAUGCAAGCUAGU -53
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