MirGeneDB ID | Cin-Mir-4013-P2 |
Family name |
MIR-4013 (all species) |
Seed |
AGGCUGC |
Species |
Sea Squirt (Ciona intestinalis) |
MiRBase ID |
cin-mir-4013b
|
Paralogues |
Cin-Mir-4013-P1
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Orthologues |
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Node of Origin (locus) |
C. intestinalis
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Node of Origin (family) |
C. intestinalis
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Genome context (ci3) |
HT000174.1: 385914-385966 [+]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
UAACUGUAUAAUACUAAACUGCGCGUGAACUUACUUGCUUUAACAGUAUGCGUUAUUAUCGUAGGCUGCUAAUGCAAGCUAGUAUUCGCUACAGUACAAACACCACGUCAAGU
Get precursor sequence
|
Structure | 10 20 30 40 50
UAACUGUAUAAUACUAA- C-| UGA UA U A A UUA
ACUG GCG ACU CUUGC UUA CAGU UGCG \
UGAC CGC UGA GAACG AAU GUCG AUGC U
UGAACUGCACCACAAACA AU^ UUA UC U C G UAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut +1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Ga |
La |
La |
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Star sequence |
Cin-Mir-4013-P2_5p* |
mirBase accession | MIMAT0016516 |
Sequence |
0- UUACUUGCUUUAACAGUAUGCG -22
Get sequence
|
Mature sequence |
Cin-Mir-4013-P2_3p |
mirBase accession | MIMAT0016517 |
Sequence |
31- UAGGCUGCUAAUGCAAGCUAGU -53
Get sequence
|