MirGeneDB ID | Cin-Mir-4029 |
Family name |
MIR-4029 (all species) |
Seed |
AAGUGCA |
Species |
Sea Squirt (Ciona intestinalis) |
MiRBase ID |
cin-mir-4029
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
C. intestinalis
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Node of Origin (family) |
C. intestinalis
|
Genome context (ci3) |
14: 3195082-3195137 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAAACAUCUUUGUUUCAAACUGCAGUGGGUAAAGUGCAACUGUGUAAACCUGAUUAUACUGCAGGUUUACAUUGCAUGCACUUAUCCUAAUGCUAGUUACAAUCAUCUGAAGUUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
UAAACAUCUUUGUUUCA- - G UA ACU-| GAUUA
AACU GCA UGGG AAGUGCA GUGUAAACCU \
UUGA CGU AUCC UUCACGU UACAUUUGGA U
UUUUGAAGUCUACUAACA U A UA ACGU^ CGUCA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Ga |
La |
La |
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Mature sequence |
Cin-Mir-4029_5p |
mirBase accession | MIMAT0016547 |
Sequence |
0- AAAGUGCAACUGUGUAAACCU -21
Get sequence
|
Star sequence |
Cin-Mir-4029_3p* |
mirBase accession | MIMAT0016548 |
Sequence |
34- GUUUACAUUGCAUGCACUUAUC -56
Get sequence
|