MirGeneDB 2.1

MirGeneDB ID

Cin-Mir-4029

Family name MIR-4029 (all species)
Seed AAGUGCA
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4029
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)
14: 3195082-3195137 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAAACAUCUUUGUUUCAAACUGCAGUGGGUAAAGUGCAACUGUGUAAACCUGAUUAUACUGCAGGUUUACAUUGCAUGCACUUAUCCUAAUGCUAGUUACAAUCAUCUGAAGUUUU
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Structure
        10         20         30        40         50       
UAAACAUCUUUGUUUCA-    -   G    UA       ACU-|         GAUUA 
                  AACU GCA UGGG  AAGUGCA    GUGUAAACCU     \
                  UUGA CGU AUCC  UUCACGU    UACAUUUGGA     U
UUUUGAAGUCUACUAACA    U   A    UA       ACGU^         CGUCA 
    110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Cr Cr Cr Cr Cr Cr Cr Cr Cr Cr Ga La La
Mature sequence

Cin-Mir-4029_5p

mirBase accessionMIMAT0016547
Sequence
0- AAAGUGCAACUGUGUAAACCU -21
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Star sequence

Cin-Mir-4029_3p*

mirBase accessionMIMAT0016548
Sequence
34- GUUUACAUUGCAUGCACUUAUC -56
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