MirGeneDB ID | Cin-Mir-4036 |
Family name |
MIR-4036 (all species) |
Seed |
GUGCAAA |
Species |
Sea Squirt (Ciona intestinalis) |
MiRBase ID |
cin-mir-4036
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
C. intestinalis
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Node of Origin (family) |
C. intestinalis
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Genome context (ci3) |
HT000034.1: 635404-635456 [+]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
AUCACGAAUCAUAUGAUCGUGAGGGCGGUGUGUGCAAAGCCCAAUCAUGUCUAUGCCAGUUAGACGGGUUGGUUUUGCAUGUGCUGACUUCACAGAAAUCUUCAAGCUUAUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
AUCACGAAUCAUAUGAUC--| G UG C A UGC
GUGAGG CGG UGUGCAAAGCC AAUC UGUCUA \
CACUUC GUC GUACGUUUUGG UUGG GCAGAU C
UUUAUUCGAACUUCUAAAGA^ A GU - - UGA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Ga |
La |
La |
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Mature sequence |
Cin-Mir-4036_5p |
mirBase accession | MIMAT0016561 |
Sequence |
0- UGUGCAAAGCCCAAUCAUGUCUA -23
Get sequence
|
Star sequence |
Cin-Mir-4036_3p* |
mirBase accession | MIMAT0016562 |
Sequence |
32- GACGGGUUGGUUUUGCAUGUG -53
Get sequence
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