MirGeneDB 2.1

MirGeneDB ID

Cin-Mir-4036

Family name MIR-4036 (all species)
Seed GUGCAAA
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4036
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)
HT000034.1: 635404-635456 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCACGAAUCAUAUGAUCGUGAGGGCGGUGUGUGCAAAGCCCAAUCAUGUCUAUGCCAGUUAGACGGGUUGGUUUUGCAUGUGCUGACUUCACAGAAAUCUUCAAGCUUAUUU
Get precursor sequence
Structure
        10          20        30        40        50       
AUCACGAAUCAUAUGAUC--|     G   UG           C    A      UGC 
                    GUGAGG CGG  UGUGCAAAGCC AAUC UGUCUA   \
                    CACUUC GUC  GUACGUUUUGG UUGG GCAGAU   C
UUUAUUCGAACUUCUAAAGA^     A   GU           -    -      UGA 
 110       100        90        80         70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Cr Cr Cr Cr Cr Cr Cr Cr Cr Cr Ga La La
Mature sequence

Cin-Mir-4036_5p

mirBase accessionMIMAT0016561
Sequence
0- UGUGCAAAGCCCAAUCAUGUCUA -23
Get sequence
Star sequence

Cin-Mir-4036_3p*

mirBase accessionMIMAT0016562
Sequence
32- GACGGGUUGGUUUUGCAUGUG -53
Get sequence