MirGeneDB 2.1

MirGeneDB ID

Cin-Mir-5600

Family name MIR-5600 (all species)
Seed CGAAACC
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-5600
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)
7: 1895997-1896062 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUAUUUGUAAUGUCAUUUUUCAGGAGUUUUUCGAAACCAAAAUACUCCAGUUUGAUCCCGGUCAACUUACACAAAGUGGAAUGUUUUGUUUCGAACGAUUCUUUAAAACUGUCAACUGUCAUGAGA
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Structure
        10          20        30        40        50        60   
AUAUUUGUAAUGUCAUU--|  C       U        C      C    G   GAUCCCGGU 
                   UUU AGGAGUU UUCGAAAC AAAAUA UCCA UUU         \
                   AAA UUCUUAG AAGCUUUG UUUUGU AGGU AAA         C
AGAGUACUGUCAACUGUCA^  U       C        -      A    G   CACAUUCAA 
    120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Cr Cr Cr Cr Cr Cr Cr Cr Cr Cr Ga La La
Mature sequence

Cin-Mir-5600_5p

mirBase accessionMIMAT0022323
Sequence
0- UCGAAACCAAAAUACUCCAGUUU -23
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Star sequence

Cin-Mir-5600_3p*

mirBase accessionMIMAT0022324
Sequence
44- AGUGGAAUGUUUUGUUUCGAAC -66
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