MirGeneDB ID | Cin-Mir-5600 |
Family name |
MIR-5600 (all species) |
Seed |
CGAAACC |
Species |
Sea Squirt (Ciona intestinalis) |
MiRBase ID |
cin-mir-5600
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
C. intestinalis
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Node of Origin (family) |
C. intestinalis
|
Genome context (ci3) |
7: 1895997-1896062 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUAUUUGUAAUGUCAUUUUUCAGGAGUUUUUCGAAACCAAAAUACUCCAGUUUGAUCCCGGUCAACUUACACAAAGUGGAAUGUUUUGUUUCGAACGAUUCUUUAAAACUGUCAACUGUCAUGAGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUAUUUGUAAUGUCAUU--| C U C C G GAUCCCGGU
UUU AGGAGUU UUCGAAAC AAAAUA UCCA UUU \
AAA UUCUUAG AAGCUUUG UUUUGU AGGU AAA C
AGAGUACUGUCAACUGUCA^ U C - A G CACAUUCAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Ga |
La |
La |
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Mature sequence |
Cin-Mir-5600_5p |
mirBase accession | MIMAT0022323 |
Sequence |
0- UCGAAACCAAAAUACUCCAGUUU -23
Get sequence
|
Star sequence |
Cin-Mir-5600_3p* |
mirBase accession | MIMAT0022324 |
Sequence |
44- AGUGGAAUGUUUUGUUUCGAAC -66
Get sequence
|