MirGeneDB ID | Dmo-Mir-316 |
Family name |
MIR-316 (all species) |
Seed |
GUCUUUU |
Species |
Fruit fly (Drosophila mojavensis) |
MiRBase ID |
dmo-mir-316
|
Paralogues |
|
Orthologues |
Aae-Mir-316
Bge-Mir-316
Dan-Mir-316
Dme-Mir-316
Dsi-Mir-316
Dya-Mir-316
Hme-Mir-316
Tca-Mir-316
|
Node of Origin (locus) |
Pancrustacea
|
Node of Origin (family) |
Pancrustacea
|
Genome context (Dmoj_caf1) |
scaffold_6680: 18891224-18891282 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUCGAUUUUUAUAUAAAGUUCUAGUCGAUUUGUCUUUUUCCGCUUACUGACGUUUUAUUGAACAACGGCAGGGAAGGGAAAAAGGCGUAUUUACUAUGAAUUAUUUCAACGAUAUAAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
AUCGAUUUUUAUAUAAA- -| C U G A- A UUUUAU
GUUC UAGU GAU UGUCUUUUUCC CUU CUG CG \
UAAG AUCA UUA GCGGAAAAAGG GAA GAC GC U
AAAAUAUAGCAACUUUAU U^ U U - GG G AACAAG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut +1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Dmo-Mir-316_5p |
mirBase accession | MIMAT0008627 |
Sequence |
0- UGUCUUUUUCCGCUUACUGACG -22
Get sequence
|
Star sequence |
Dmo-Mir-316_3p* |
mirBase accession | None |
Sequence |
37- GCAGGGAAGGGAAAAAGGCGUA -59
Get sequence
|