MirGeneDB ID | Dno-Mir-1301 |
Family name |
MIR-1301 (all species) |
Seed |
UGCAGCU |
Species |
Nine-banded armadillo (Dasypus novemcinctus) |
MiRBase ID |
dno-mir-1301
|
Paralogues |
|
Orthologues |
Bta-Mir-1301
Cfa-Mir-1301
Cpo-Mir-1301
Ete-Mir-1301
Hsa-Mir-1301
Mml-Mir-1301
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (dasNov3) |
JH564648: 198054-198113 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCAGGGAGCCCUAGAUUGGGGGUUGUGGGGGGUCACUCUGGGCACCGCAGCACUGUGCUGGGGAUGUUGCAGCUGCCUGGGAGUGAUUUCACACAGUCCCCUCUGCCUCGAGGGGCACCC
Get precursor sequence
|
Structure | 10 20 30 40 50
CCAGGGAGCCCUAGAUU-- GU G GG - UG CC-| CUGUG
GGGG UGUG G GUCACU C GGCA GCAGCA C
CCCC ACAC C UAGUGA G CCGU CGUUGU U
CCCACGGGGAGCUCCGUCU UG A UU G GU CGA^ AGGGG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dno-Mir-1301_5p* |
mirBase accession | MIMAT0048043 |
Sequence |
0- GGUCACUCUGGGCACCGCAGCA -22
Get sequence
|
Mature sequence |
Dno-Mir-1301_3p |
mirBase accession | MIMAT0048044 |
Sequence |
36- UUGCAGCUGCCUGGGAGUGAUUUC -60
Get sequence
|