MirGeneDB ID | Dno-Mir-138-P2 |
Family name |
MIR-138 (all species) |
Seed |
GCUGGUG |
Species |
Nine-banded armadillo (Dasypus novemcinctus) |
MiRBase ID |
dno-mir-138-2
|
Paralogues |
Dno-Mir-138-P1
|
Orthologues |
Aca-Mir-138-P2
Ami-Mir-138-P2
Bta-Mir-138-P2
Cfa-Mir-138-P2
Cli-Mir-138-P2
Cmi-Mir-138-P2
Cpi-Mir-138-P2
Cpo-Mir-138-P2
Dre-Mir-138-P2
Ete-Mir-138-P2
Gga-Mir-138-P2
Gja-Mir-138-P2
Gmo-Mir-138-P2
Hsa-Mir-138-P2
Lch-Mir-138-P2
Loc-Mir-138-P2
Mal-Mir-138-P2
Mdo-Mir-138-P2
Mml-Mir-138-P2
Mmu-Mir-138-P2
Oan-Mir-138-P2
Ocu-Mir-138-P2
Pbv-Mir-138-P2
Pma-Mir-138-o2
Rno-Mir-138-P2
Sha-Mir-138-P2
Spt-Mir-138-P2
Sto-Mir-138-P2
Tgu-Mir-138-P2
Tni-Mir-138-P2
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (dasNov3) |
JH567044: 128013-128080 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGCCGCCCGAGUUCUGGUAUCGGUGCUGCAGCUGGUGUUGUGAAUCAGGCCGACGAGCAGCGCAUCCUCUUACCCGGCUAUUUCACGACACCAGGGUUGCAUCAUACCUAUCCUCUCCAGGCGAGCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAGCCGCCCGAGUUCUG---| C U AG UCA ACGAGCAGCG
GUAU GGUGC GC CUGGUGUUGUGAA GGCCG C
CAUA CUACG UG GACCACAGCACUU UCGGC A
CCGAGCGGACCUCUCCUAUC^ - U G- UA- CCAUUCUCCU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Dno-Mir-138-P2_5p |
mirBase accession | MIMAT0047648 |
Sequence |
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
|
Star sequence |
Dno-Mir-138-P2_3p* |
mirBase accession | MIMAT0047650 |
Sequence |
47- GCUAUUUCACGACACCAGGGU -68
Get sequence
|