MirGeneDB ID | Dno-Mir-143 |
Family name |
MIR-143 (all species) |
Seed |
GAGAUGA |
Species |
Nine-banded armadillo (Dasypus novemcinctus) |
MiRBase ID |
dno-mir-143
|
Paralogues |
|
Orthologues |
Aca-Mir-143
Ami-Mir-143
Bta-Mir-143
Cfa-Mir-143
Cli-Mir-143
Cmi-Mir-143
Cpi-Mir-143
Cpo-Mir-143
Dre-Mir-143
Ebu-Mir-143
Ete-Mir-143
Gga-Mir-143
Gja-Mir-143
Gmo-Mir-143
Hsa-Mir-143
Lch-Mir-143
Loc-Mir-143
Mal-Mir-143
Mdo-Mir-143
Mml-Mir-143
Mmu-Mir-143
Mun-Mir-143
Oan-Mir-143
Ocu-Mir-143
Pbv-Mir-143
Pma-Mir-143
Rno-Mir-143
Sha-Mir-143
Spt-Mir-143
Sto-Mir-143
Tgu-Mir-143
Xla-Mir-143-P1
Xla-Mir-143-P2
Xtr-Mir-143
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (dasNov3) |
JH564027: 227766-227820 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGCAGCACGCGCCCUGUCUCCCAGCCUGAGGUGCAGUGCUGCAUCUCUGGUCAGUUGGGAGUCUGAGAUGAAGCACUGUAGCUCGGGAAGGGAGAAGUUGUUCUGCGGGCUGGC
Get precursor sequence
|
Structure | 10 20 30 40 50
AAGCAGCACGCGCCCUG--| AG G G UGGUCAGU
UCUCCC CCUGAG UGCAGUGCU CAUCUC \
AGAGGG GGGCUC AUGUCACGA GUAGAG U
CGGUCGGGCGUCUUGUUGA^ AA G A UCUGAGGG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Dno-Mir-143_5p* |
mirBase accession | MIMAT0047659 |
Sequence |
0- GGUGCAGUGCUGCAUCUCUGG -21
Get sequence
|
Mature sequence |
Dno-Mir-143_3p |
mirBase accession | MIMAT0047660 |
Sequence |
34- UGAGAUGAAGCACUGUAGCUC -55
Get sequence
|