MirGeneDB ID | Dya-Mir-1003 |
Family name |
MIR-1003 (all species) |
Seed |
CUCACAU |
Species |
Fruit fly (Drosophila yakuba) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Dan-Mir-1003
Dme-Mir-1003
Dmo-Mir-1003
Dsi-Mir-1003
|
Node of Origin (locus) |
Drosophila
|
Node of Origin (family) |
Drosophila
|
Genome context (Drosophila_yakuba.dyak_caf1.dna.toplevel) |
3R: 26013217-26013272 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCGUGAACUGGCUCUGAAGCUGCGCAGAAGGUGGGUAUCUGGAUGUGGUUGGCUCUGGCGGUCCUCUCACAUUUACAUAUUCACAGGCGUCGUGAGCUGCGACACAAAUAUGGAAC
Get precursor sequence
|
Structure | 10 20 30 40 50
GCGUGAACUGGCUCUGA- ----| AGAAG C UU CUCU
AGCU GCGC GUGGGUAU UGGAUGUGG GG G
UCGA UGCG CACUUAUA AUUUACACU CC G
CAAGGUAUAAACACAGCG GUGC^ GA--- C CU UGGC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Dya-Mir-1003_5p* |
mirBase accession | None |
Sequence |
0- GUGGGUAUCUGGAUGUGGUUGG -22
Get sequence
|
Mature sequence |
Dya-Mir-1003_3p |
mirBase accession | None |
Sequence |
34- UCUCACAUUUACAUAUUCACAG -56
Get sequence
|