MirGeneDB ID | Dya-Mir-971 |
Family name |
MIR-971 (all species) |
Seed |
UGGUGUU |
Species |
Fruit fly (Drosophila yakuba) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aae-Mir-971
Bge-Mir-971-v1
Bge-Mir-971-v2
Dan-Mir-971
Dme-Mir-971
Dmo-Mir-971
Dsi-Mir-971
Hme-Mir-971
Tca-Mir-971
|
Node of Origin (locus) |
Neoptera
|
Node of Origin (family) |
Neoptera
|
Genome context (Drosophila_yakuba.dyak_caf1.dna.toplevel) |
X: 7229804-7229865 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGUGAGAGAAUUCCGUGGCUGGCAUCGCUCGCUGUAAAUUGUAAUCAUCAAAGCGUUUUCUCAGAGCCGCUUGGUGUUACUUCUUACAGUGAGUGUGCCAGUCCGUACACAGAAAGAAAAAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGUGAGAGAAUUCCGUG---| U AUU U A GUUUUC
GCUGGCA CGCUCGCUGUAA GUAA CAUCAA GC U
UGACCGU GUGAGUGACAUU CAUU GUGGUU CG C
CAAAAAGAAAGACACAUGCC^ - CUU - - CCGAGA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Dya-Mir-971_5p* |
mirBase accession | None |
Sequence |
0- GCUGUAAAUUGUAAUCAUCAAAGC -24
Get sequence
|
Mature sequence |
Dya-Mir-971_3p |
mirBase accession | None |
Sequence |
40- UUGGUGUUACUUCUUACAGUGA -62
Get sequence
|