MirGeneDB ID | Dya-Mir-989 |
Family name |
MIR-989 (all species) |
Seed |
GUGAUGU |
Species |
Fruit fly (Drosophila yakuba) |
MiRBase ID |
|
Paralogues |
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Orthologues |
Aae-Mir-989
Dan-Mir-989
Dme-Mir-989
Dmo-Mir-989
Dsi-Mir-989
Hme-Mir-989-P1
Hme-Mir-989-P2
Tca-Mir-989
|
Node of Origin (locus) |
Endopterygota
|
Node of Origin (family) |
Endopterygota
|
Genome context (Drosophila_yakuba.dyak_caf1.dna.toplevel) |
2R: 9968940-9969082 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUUAUUUAAUUACAAAGAUGCCGGGAAUCGGCCACUACCUUGCAGUCACGUGAUGAAAAGACACAGGUGACACUGAUCCGGAUUUGGUGGUGGACCCAUUCUCAUUCCGAGAUUAGUUUUAUUUUGCGUCUUUUGAAUUCGAAUAGUUCAUGUGAUGUGACGUAGUGGAACAUACCUGGUGUUGCAAGCAACAUGGAGUAAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70 80 90 100
UUUUAUUUAAUUACAAA--| A CGG C UG G AUGAAAAGACACAGGUGACACUGAUCCGGAUUUGGUGGUGGACCCAU
GAUGCCGGG AU CCACUAC U CA UCACGUG U
UUGUGGUCC UA GGUGAUG A GU AGUGUAC C
GAAUGAGGUACAACGAACG^ A CAA C GU - UUGAUAAGCUUAAGUUUUCUGCGUUUUAUUUUGAUUAGAGCCUUACU
200 190 180 170 160 150 140 130 120 110 |
Deep sequencing |
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|
Comment | The mirbase entry is incomplete at the 5' end. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dya-Mir-989_5p* |
mirBase accession | None |
Sequence |
0- GGCCACUACCUUGCAGUCACGUG -23
Get sequence
|
Mature sequence |
Dya-Mir-989_3p |
mirBase accession | None |
Sequence |
121- UGUGAUGUGACGUAGUGGAACA -143
Get sequence
|