| MirGeneDB ID | Ete-Mir-1247 |
|---|
| Family name |
MIR-1247 (all species) |
|---|
| Seed |
CCCGUCC |
|---|
| Species |
Lesser hedgehog tenrec (Echinops telfairi) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bta-Mir-1247
Cfa-Mir-1247
Cpo-Mir-1247
Dno-Mir-1247
Hsa-Mir-1247
Mml-Mir-1247
Mmu-Mir-1247
Ocu-Mir-1247
Rno-Mir-1247
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(echTel2) |
JH980297: 81608636-81608693 [+]
UCSC
|
|---|
Precursor
(pre-Mir +30nt flank) |
NNNNNNGGCGCAGCCCUGGCCGCUGGGCGCACCCGUCCCGUGCGUCCCCGGACGUGGCUCUCAGCCCCGGGAACGUCGAGACUGGAGCGCCGGAGCCGAGCCGCCCUCGGCGACCCCG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
NNNNNNGGCGCAGCCCU----| CG G A C C U C ACGUGGC
GGC CUGG CGC CC GUC CG GCGU CCCGG \
CCG GGCC GCG GG CAG GC UGCA GGGCC U
GCCCCAGCGGCUCCCGCCGAG^ A- - A U A - A CCGACUC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Ete-Mir-1247_5p |
| mirBase accession | None |
|---|
| Sequence |
0- ACCCGUCCCGUGCGUCCCCGGA -22
Get sequence
|
|---|
| Star sequence |
Ete-Mir-1247_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- CGGGAACGUCGAGACUGGAGC -58
Get sequence
|
|---|
