MirGeneDB ID | Ete-Mir-1249 |
Family name |
MIR-1249 (all species) |
Seed |
CGCCCUU |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-1249
Cfa-Mir-1249
Cpo-Mir-1249
Dno-Mir-1249
Hsa-Mir-1249
Mml-Mir-1249
Mmu-Mir-1249
Ocu-Mir-1249
Rno-Mir-1249
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980300: 5358557-5358615 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CUUGUUCUACAGAUUCUUGUUUGCAUGGGGAGGAGGGAGGAGAUGGGCCAAGUUCCCUCUUCCUGGAACGCCCUUCCCCCCCUUCUUCACCCGGCGAACUCCUACUCGUCCUUCGGACC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUUGUUCUACAGAUUCUU--| A - A A U CAA CCUC
GUUUGC UGGG GAGGAGGG GG GA GGGC GUUC U
CAAGCG GCCC CUUCUUCC CC CU CCCG CAAG U
CCAGGCUUCCUGCUCAUCCU^ - A C C U --- GUCC
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ete-Mir-1249_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGGAGGGAGGAGAUGGGCCAAGUUC -25
Get sequence
|
Mature sequence |
Ete-Mir-1249_3p |
mirBase accession | None |
Sequence |
37- ACGCCCUUCCCCCCCUUCUUCA -59
Get sequence
|