MirGeneDB ID | Ete-Mir-1296 |
Family name |
MIR-1296 (all species) |
Seed |
UAGGGCC |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-1296
Cfa-Mir-1296
Cpo-Mir-1296
Dno-Mir-1296
Hsa-Mir-1296
Mml-Mir-1296
Ocu-Mir-1296
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980301: 54131691-54131755 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
UGAAAUCACCGAAGCACCUACCUAACUGGGUUAGGGCCCUGGCUCCAUCUCCUUUAGGAAAAACUUCUGUGGGGAGUGGGGCUUCGACCCUAACCCAGCUGGGCUGUAACACUGCUGCAUUUUCU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGAAAUCACCGAAGCACCUA-- A CCCU -| UUUAGGAA
CCUA CUGGGUUAGGG GGCUCCA UCUCC A
GGGU GACCCAAUCCC UCGGGGU AGGGG A
UCUUUUACGUCGUCACAAUGUC C AGCU G^ UGUCUUCA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-1296_5p |
mirBase accession | None |
Sequence |
0- UUAGGGCCCUGGCUCCAUCUCC -22
Get sequence
|
Star sequence |
Ete-Mir-1296_3p* (predicted) |
mirBase accession | None |
Sequence |
43- GAGUGGGGCUUCGACCCUAACC -65
Get sequence
|