MirGeneDB ID | Ete-Mir-138-P1 |
Family name |
MIR-138 (all species) |
Seed |
GCUGGUG |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-138-P2
|
Orthologues |
Aca-Mir-138-P1
Ami-Mir-138-P1
Bta-Mir-138-P1
Cfa-Mir-138-P1
Cli-Mir-138-P1
Cmi-Mir-138-P1
Cpo-Mir-138-P1
Dno-Mir-138-P1
Dre-Mir-138-P1a
Gga-Mir-138-P1
Gja-Mir-138-P1
Gmo-Mir-138-P1a
Gmo-Mir-138-P1b
Hsa-Mir-138-P1
Lch-Mir-138-P1
Loc-Mir-138-P1
Mal-Mir-138-P1a
Mal-Mir-138-P1b
Mdo-Mir-138-P1
Mml-Mir-138-P1
Mmu-Mir-138-P1
Mun-Mir-138-P1
Oan-Mir-138-P1
Ocu-Mir-138-P1
Pbv-Mir-138-P1
Pma-Mir-138-o1
Rno-Mir-138-P1
Sha-Mir-138-P1
Spt-Mir-138-P1
Sto-Mir-138-P1
Tgu-Mir-138-P1
Tni-Mir-138-P1a
Xla-Mir-138-P1c
Xla-Mir-138-P1d
Xtr-Mir-138-P1
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (echTel2) |
JH980325: 6972694-6972754 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CUCCAACCUCCAGGCAUGGUGCGGUGGGGCAGCUGGUGUUGUGAAUCAGGCCGUGACCAAUCGGAAAACGGCUACUUCACAACACCAGGGUCGCACCCCACCCCAGGCUGCACUCCAGACU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUCCAACCUCCAGGCAU--| C G AG UCA UGACCAA
GGUG GGUG GGC CUGGUGUUGUGAA GGCCG \
CCAC CCAC CUG GACCACAACACUU UCGGC U
UCAGACCUCACGUCGGACC^ C G G- CA- AAAAGGC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-138-P1_5p |
mirBase accession | None |
Sequence |
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
|
Star sequence |
Ete-Mir-138-P1_3p* |
mirBase accession | None |
Sequence |
40- GCUACUUCACAACACCAGGGU -61
Get sequence
|