MirGeneDB ID | Ete-Mir-28-P3 |
Family name |
MIR-28 (all species) |
Seed |
AGGAGCU |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-28-P1
Ete-Mir-28-P2
|
Orthologues |
Bta-Mir-28-P3
Cfa-Mir-28-P3
Cpo-Mir-28-P3
Dno-Mir-28-P3
Hsa-Mir-28-P3
Mml-Mir-28-P3
Mmu-Mir-28-P3
Ocu-Mir-28-P3
Rno-Mir-28-P3
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980327: 7885404-7885472 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GCUGCUGUGUGUGAAAUGGGGACUGCCCUCAAGGAGCUUACAAUCUAGCUGGGGCUAAAAGACUUGCACACAAACACAACUAGACUGUGAGCUUCUAGAGGGCAGGGAUCAUACCCUAGUCAUCUCGCU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCUGCUGUGUGUGAAAU--| GGA A A C GGGCUAAAAGAC
GG CUGCCCUC AGGAGCUUACA UCUAG UG \
CU GACGGGAG UCUUCGAGUGU AGAUC AC U
UCGCUCUACUGAUCCCAUA^ AGG A C A ACAAACACACGU
120 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-28-P3_5p |
mirBase accession | None |
Sequence |
0- AAGGAGCUUACAAUCUAGCUGGG -23
Get sequence
|
Co-mature sequence |
Ete-Mir-28-P3_3p |
mirBase accession | None |
Sequence |
46- CAACUAGACUGUGAGCUUCUAGA -69
Get sequence
|