MirGeneDB ID | Ete-Mir-328 |
Family name |
MIR-328 (all species) |
Seed |
UGGCCCU |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-328
Cfa-Mir-328
Cpo-Mir-328
Dno-Mir-328
Hsa-Mir-328
Mml-Mir-328
Mmu-Mir-328
Ocu-Mir-328
Rno-Mir-328
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980312: 18343632-18343689 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GGGCCGUCUCGGAGCCUGAGGCGGAGGGCGGGGAGGCAGUAGGGGCUCAGGGGGAGUGUGUGCAGCCCUGGCCCUCUCUGCCCUUCCGCCCCCCGGCCCCGCCCCGCGCUACCGCUAC
Get precursor sequence
|
Structure | 10 20 30 40 50
GGGCCGUCUCGGAGCCU- A -| A GA UA U GGAGUG
G GG CGG GGGCGGG GGCAG GGGGC CAGGG \
C CC GCC CCCGCCU CCGUC UCCCG GUCCC U
CAUCGCCAUCGCGCCCCG C G^ C UC UC - GACGUG
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ete-Mir-328_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGGAGGCAGUAGGGGCUCAGGG -22
Get sequence
|
Mature sequence |
Ete-Mir-328_3p (predicted) |
mirBase accession | None |
Sequence |
37- CUGGCCCUCUCUGCCCUUCCG -58
Get sequence
|