MirGeneDB 2.1

MirGeneDB ID

Ete-Mir-328

Family name MIR-328 (all species)
Seed UGGCCCU
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues
Orthologues Bta-Mir-328  Cfa-Mir-328  Cpo-Mir-328  Dno-Mir-328  Hsa-Mir-328  Mml-Mir-328  Mmu-Mir-328  Ocu-Mir-328  Rno-Mir-328 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(echTel2)
JH980312: 18343632-18343689 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GGGCCGUCUCGGAGCCUGAGGCGGAGGGCGGGGAGGCAGUAGGGGCUCAGGGGGAGUGUGUGCAGCCCUGGCCCUCUCUGCCCUUCCGCCCCCCGGCCCCGCCCCGCGCUACCGCUAC
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Structure
        10         20         30        40        50         
GGGCCGUCUCGGAGCCU- A  -|  A       GA     UA     U     GGAGUG 
                  G GG CGG GGGCGGG  GGCAG  GGGGC CAGGG      \
                  C CC GCC CCCGCCU  CCGUC  UCCCG GUCCC      U
CAUCGCCAUCGCGCCCCG C  G^  C       UC     UC     -     GACGUG 
      110       100        90        80         70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Ete-Mir-328_5p* (predicted)

mirBase accessionNone
Sequence
0- GGGAGGCAGUAGGGGCUCAGGG -22
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Mature sequence

Ete-Mir-328_3p (predicted)

mirBase accessionNone
Sequence
37- CUGGCCCUCUCUGCCCUUCCG -58
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