MirGeneDB ID | Ete-Mir-335 |
Family name |
MIR-335 (all species) |
Seed |
CAAGAGC |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-335
Cfa-Mir-335
Cpo-Mir-335
Dno-Mir-335
Hsa-Mir-335
Mml-Mir-335
Mmu-Mir-335
Ocu-Mir-335
Rno-Mir-335
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980321: 23378815-23378872 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GGCUGGGGGAAAGACUGCUUUGGGCGGGGGUCAAGAGCAAUAACGAAAAAUGUUUGUCAUAAACCGUUUUUCAUUAUUGCUCCUGACCUCCUCCCAAGGGCUCGCUGCGGUUGCGUGA
Get precursor sequence
|
Structure | 10 20 30 40 50
GGCUGGGGGAAAGACUG--| C A C UUUGU
CUUUGGG GGGGGUCA GAGCAAUAA GAAAAAUG C
GGAACCC CCUCCAGU CUCGUUAUU CUUUUUGC A
AGUGCGUUGGCGUCGCUCG^ U C A CAAAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-335_5p |
mirBase accession | None |
Sequence |
0- UCAAGAGCAAUAACGAAAAAUG -22
Get sequence
|
Star sequence |
Ete-Mir-335_3p* |
mirBase accession | None |
Sequence |
36- UUUUUCAUUAUUGCUCCUGACC -58
Get sequence
|