MirGeneDB ID | Ete-Mir-490 |
Family name |
MIR-490 (all species) |
Seed |
AACCUGG |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aca-Mir-490
Ami-Mir-490
Bta-Mir-490
Cfa-Mir-490
Cli-Mir-490
Cpi-Mir-490
Cpo-Mir-490
Dno-Mir-490
Gga-Mir-490
Gja-Mir-490
Hsa-Mir-490
Mdo-Mir-490
Mml-Mir-490
Mmu-Mir-490
Oan-Mir-490
Ocu-Mir-490
Pbv-Mir-490
Rno-Mir-490
Sha-Mir-490
Spt-Mir-490
Tgu-Mir-490
|
Node of Origin (locus) |
Amniota
|
Node of Origin (family) |
Amniota
|
Genome context (echTel2) |
JH980321: 29203809-29203868 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
UUGAUGGUUUACAAAUUACGUGGUUCGACACCAUGGAUCUCCAGGUGGGUCCGAGAUAGAUGCACACCAACCUGGUGGACUCCAUGCUGUUGAGCUAUUCACAAGCAGCGAUGCUUCCUU
Get precursor sequence
|
Structure | 10 20 30 40 50
UUGAUGGUUUACAAAUUAC--- C - -| G CCGAGAU
GUGGUUCGACA CAUGGA UCU CCAGGU GGU \
UAUCGAGUUGU GUACCU AGG GGUCCA CCA A
UUCCUUCGUAGCGACGAACACU C C U^ A CACGUAG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ete-Mir-490_5p* |
mirBase accession | None |
Sequence |
0- CCAUGGAUCUCCAGGUGGGU -20
Get sequence
|
Mature sequence |
Ete-Mir-490_3p |
mirBase accession | None |
Sequence |
37- CAACCUGGUGGACUCCAUGCUGU -60
Get sequence
|