MirGeneDB ID | Ete-Novel-4 |
Family name |
ETE-NOVEL-4 (all species) |
Seed |
GAGGUAU |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
E. telfairi
|
Node of Origin (family) |
E. telfairi
|
Genome context (echTel2) |
JH980335: 17761038-17761101 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
AUGUUUGUUUGCCAACUGCGCCCUCCCCUGUGAGGUAUUUUUGUAAGCGCCAUUAUAAAAUUUGGCACUGUGGUGCUUACGAAAAUACCUUGGCGGUGGGGGUGCUUAACCGUUUGCGCAACCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUGUUUGUUUGCCAACU-- - -| GU UUAUAAAA
GCGCCCUC CC CU GAGGUAUUUUUGUAAGCGCCA U
CGUGGGGG GG GG UUCCAUAAAAGCAUUCGUGGU U
CCCAACGCGUUUGCCAAUU U C^ -- GUCACGGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Ete-Novel-4_5p |
mirBase accession | None |
Sequence |
0- UGAGGUAUUUUUGUAAGCGCCA -22
Get sequence
|
Star sequence |
Ete-Novel-4_3p* |
mirBase accession | None |
Sequence |
42- GUGCUUACGAAAAUACCUUGGC -64
Get sequence
|