MirGeneDB 2.1

MirGeneDB ID

Ete-Novel-4

Family name ETE-NOVEL-4 (all species)
Seed GAGGUAU
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) E. telfairi
Node of Origin (family) E. telfairi
Genome context
(echTel2)
JH980335: 17761038-17761101 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AUGUUUGUUUGCCAACUGCGCCCUCCCCUGUGAGGUAUUUUUGUAAGCGCCAUUAUAAAAUUUGGCACUGUGGUGCUUACGAAAAUACCUUGGCGGUGGGGGUGCUUAACCGUUUGCGCAACCC
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Structure
        10          20          30        40        50        60 
AUGUUUGUUUGCCAACU--        -  -| GU                     UUAUAAAA 
                   GCGCCCUC CC CU  GAGGUAUUUUUGUAAGCGCCA        U
                   CGUGGGGG GG GG  UUCCAUAAAAGCAUUCGUGGU        U
CCCAACGCGUUUGCCAAUU        U  C^ --                     GUCACGGU 
  120       110       100          90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
To
Mature sequence

Ete-Novel-4_5p

mirBase accessionNone
Sequence
0- UGAGGUAUUUUUGUAAGCGCCA -22
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Star sequence

Ete-Novel-4_3p*

mirBase accessionNone
Sequence
42- GUGCUUACGAAAAUACCUUGGC -64
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