MirGeneDB ID | Ete-Novel-5 |
Family name |
ETE-NOVEL-5 (all species) |
Seed |
GCCACCG |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
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Node of Origin (locus) |
E. telfairi
|
Node of Origin (family) |
E. telfairi
|
Genome context (echTel2) |
JH980369: 8721769-8721826 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CACCACCCACGGUGCCGCAUGCCGGGGAGGCUGGGGAGGCUGGGGAGGCUGGCGUCACUCGAGUCCAGCCACCGUGGCCCUUCCAGCUUCCCUGGGUGCACAGUCAGCAUGUCCUGUG
Get precursor sequence
|
Structure | 10 20 30 40 50
CACCACCCACGGUGCCG---| G GA G A CGUCA
CAU CCGGGGAGGCUGGG GGCUG GG GGCUGG C
GUG GGUCCCUUCGACCU CCGGU CC CCGACC U
GUGUCCUGUACGACUGACAC^ - UC G A UGAGC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ete-Novel-5_5p* |
mirBase accession | None |
Sequence |
0- CUGGGGAGGCUGGGGAGGCUGG -22
Get sequence
|
Mature sequence |
Ete-Novel-5_3p |
mirBase accession | None |
Sequence |
36- AGCCACCGUGGCCCUUCCAGCU -58
Get sequence
|