MirGeneDB 2.1

MirGeneDB ID

Ete-Novel-5

Family name ETE-NOVEL-5 (all species)
Seed GCCACCG
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) E. telfairi
Node of Origin (family) E. telfairi
Genome context
(echTel2)
JH980369: 8721769-8721826 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CACCACCCACGGUGCCGCAUGCCGGGGAGGCUGGGGAGGCUGGGGAGGCUGGCGUCACUCGAGUCCAGCCACCGUGGCCCUUCCAGCUUCCCUGGGUGCACAGUCAGCAUGUCCUGUG
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Structure
        10           20        30        40        50        
CACCACCCACGGUGCCG---|  G              GA     G  A      CGUCA 
                    CAU CCGGGGAGGCUGGG  GGCUG GG GGCUGG     C
                    GUG GGUCCCUUCGACCU  CCGGU CC CCGACC     U
GUGUCCUGUACGACUGACAC^  -              UC     G  A      UGAGC 
      110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Ete-Novel-5_5p*

mirBase accessionNone
Sequence
0- CUGGGGAGGCUGGGGAGGCUGG -22
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Mature sequence

Ete-Novel-5_3p

mirBase accessionNone
Sequence
36- AGCCACCGUGGCCCUUCCAGCU -58
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