MirGeneDB ID | Gmo-Mir-219-P3b |
Family name |
MIR-219 (all species) |
Seed |
GAUUGUC |
Species |
Cod (Gadus morhua) |
MiRBase ID |
gmo-mir-219-1
|
Paralogues |
Gmo-Mir-219-P2a
Gmo-Mir-219-P3a
|
Orthologues |
Aae-Mir-219
Aca-Mir-219-P3
Ami-Mir-219-P3
Bfl-Mir-219
Bge-Mir-219
Bla-Mir-219
Bta-Mir-219-P3
Cfa-Mir-219-P3
Cgi-Mir-219
Cin-Mir-219
Cmi-Mir-219-P3
Cpi-Mir-219-P3
Cpo-Mir-219-P3
Csc-Mir-219
Cte-Mir-219
Dan-Mir-219
Dma-Mir-219
Dme-Mir-219
Dmo-Mir-219
Dno-Mir-219-P3
Dpu-Mir-219
Dsi-Mir-219
Dya-Mir-219
Esc-Mir-219
Ete-Mir-219-P3
Gja-Mir-219-P3
Hsa-Mir-219-P3
Isc-Mir-219
Lan-Mir-219
Lch-Mir-219-P3
Mal-Mir-219-P3b
Mdo-Mir-219-P3
Mml-Mir-219-P3
Mmu-Mir-219-P3
Mmu-Mir-219-P3-as
Mun-Mir-219-P3-v1
Mun-Mir-219-P3-v2
Obi-Mir-219
Ocu-Mir-219-P3
Ovu-Mir-219
Pbv-Mir-219-P3
Pfl-Mir-219
Pmi-Mir-219
Rno-Mir-219-P3
Sha-Mir-219-P3
Sko-Mir-219
Spt-Mir-219-P3
Spu-Mir-219
Sto-Mir-219-P3-v1
Sto-Mir-219-P3-v2
Tca-Mir-219
Tni-Mir-219-P3b
Xbo-Mir-219
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_1282: 19894-19956 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGUGUGUCUCUCUGACUGGGGGCUCGAGGUUGAUUGUCCAAACGCAAUUCUUGUGUUCCUGGUGGCAGCAGGAGUUGUGACUGGACAUCUGCCCUCUGGCCUCUACUACCGGGAGAGACAGGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGUGUGUCUCUCUGACU-- C UU-| U AA UGUUCCU
GGGGGCU GAGG GAU GUCCA CGCAAUUCUUG \
UCUCCGG CUCC CUA CAGGU GUGUUGAGGAC G
CGGACAGAGAGGGCCAUCA U CGU^ - CA GACGGUG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature. |
3' NTU |
No
|
Motifs | UG at 5p(-14), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Gmo-Mir-219-P3b_5p |
mirBase accession | MIMAT0044115 |
Sequence |
0- UGAUUGUCCAAACGCAAUUCUUG -23
Get sequence
|
Co-mature sequence |
Gmo-Mir-219-P3b_3p |
mirBase accession | None |
Sequence |
40- GGAGUUGUGACUGGACAUCUGCC -63
Get sequence
|