MirGeneDB ID | Lan-Mir-1990 |
Family name |
MIR-1990 (all species) |
Seed |
GGGACUA |
Species |
Lingula (Lingula anatina) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Cgi-Mir-1990
Cte-Mir-1990-P1
Cte-Mir-1990-P2
Efe-Mir-1990-P1
Efe-Mir-1990-P2
Efe-Mir-1990-P3
Lgi-Mir-1990
Npo-Mir-1990
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Lophotrochozoa
|
Genome context (LinAna_1.0) |
LFEI01000037: 537538-537595 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGAUGUACACAGACAUAGGAGGUCUCGCGCUGUAAGUUUACAUAGUCCCAGGUUGUGACGGGUUCCCGGGACUAUGUCAACUUCCAGCUUGGCACCCUUCUCAUCACCACGCACAGUU
Get precursor sequence
|
Structure | 10 20 30 40 50
AGAUGUACACAGACAUA- UC-| C U U A UUGUG
GGAGG UCG GCUG AAGUU ACAUAGUCCC GG A
CUUCC GGU CGAC UUCAA UGUAUCAGGG CC C
UUGACACGCACCACUACU CAC^ U C C C UUGGG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Lan-Mir-1990_5p* (predicted) |
mirBase accession | None |
Sequence |
0- UGUAAGUUUACAUAGUCCCAGG -22
Get sequence
|
Mature sequence |
Lan-Mir-1990_3p |
mirBase accession | None |
Sequence |
36- CGGGACUAUGUCAACUUCCAGC -58
Get sequence
|