MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-3090

Family name MIR-3090 (all species)
Seed CCCAGGU
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-3090
Paralogues
Orthologues
Node of Origin (locus) M. musculus
Node of Origin (family) M. musculus
Genome context
(mm10)
chr2: 133564722-133564781 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCUGCCACCCUAUGAUUCCUGUCCCAGUGGUCUGGGUGGGGCCUGAGAUCCUGAAUUUCUAAUGAGCUCCCAGGUGACACCCUGACUCACUGUGCCAGAGGACUGCAGUUUGAGUAGCA
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Structure
        10          20        30         40        50         
UCCUGCCACCCUAUGAU-  -   UCC     -|  U     GG     A  UCCUGAAUU 
                  UC CUG   CAGUG GUC GGGUG  GCCUG GA         \
                  GG GAC   GUCAC CAG CCCAC  UGGAC CU         U
ACGAUGAGUUUGACGUCA  A   CGU     U^  U     AG     C  CGAGUAAUC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Star sequence

Mmu-Mir-3090_5p*

mirBase accessionMIMAT0014901
Sequence
0- GUCUGGGUGGGGCCUGAGAUC -21
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Proposed targets TargetScanVert: mmu-miR-3090-5p
miRDB: MIMAT0014901
Mature sequence

Mmu-Mir-3090_3p

mirBase accessionMIMAT0014902
Sequence
38- UCCCAGGUGACACCCUGACUCA -60
Get sequence
Proposed targets TargetScanVert: mmu-miR-3090-3p
miRDB: MIMAT0014902