MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-5621

Family name MIR-5621 (all species)
Seed GGGCCCU
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-5621
Paralogues
Orthologues
Node of Origin (locus) M. musculus
Node of Origin (family) M. musculus
Genome context
(mm10)
chr11: 115795824-115795886 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCAUCCGGCUCAUUGAGCAGGUGGGGCUCAGGAGGUCCUGGGGCCGCCCUGAAGGCAGAACAUGAGAAUUCUGGGCCCUCCAGACCUCAUGCUUCCUGCCUGUGUGGCCUGCCUGGGAGGGA
Get precursor sequence
Structure
        10          20        30        40        50        60  
AUCAUCCGGCUCAUUGA--|    UG   CU  G      C     CC    U  AGGCAGAA 
                   GCAGG  GGG  CA GAGGUC UGGGG  GCCC GA        \
                   UGUCC  CCU  GU CUCCAG ACCUC  CGGG CU        C
AGGGAGGGUCCGUCCGGUG^    GU   UC  A      -     C-    U  UAAGAGUA 
 120       110       100        90         80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Star sequence

Mmu-Mir-5621_5p*

mirBase accessionMIMAT0022369
Sequence
0- AGGAGGUCCUGGGGCCGCCCUGA -23
Get sequence
Proposed targets TargetScanVert: mmu-miR-5621-5p
miRDB: MIMAT0022369
Mature sequence

Mmu-Mir-5621_3p

mirBase accessionMIMAT0022370
Sequence
42- UGGGCCCUCCAGACCUCAUGC -63
Get sequence
Proposed targets TargetScanVert: mmu-miR-5621-3p
miRDB: MIMAT0022370