MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-879

Family name MIR-879 (all species)
Seed GAGGCUU
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-879
Paralogues
Orthologues Rno-Mir-879 
Node of Origin (locus) Muridae
Node of Origin (family) Muridae
Genome context
(mm10)
chr5: 9375714-9375769 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGAGAUUCACAAGACAAGUUUCUAGGUCCAGAGGCUUAUAGCUCUAAGCCUUGGAUGAAAGAGGCUUAUGGCUUCAAGCUUUCGGAGCUGGAGACUUACUGCUCUUCGUGGUCAA
Get precursor sequence
Structure
        10          20        30        40        50       
CAGAGAUUCACAAGACA--|        G   AG      AU    C       UGGA 
                   AGUUUCUAG UCC  AGGCUU  AGCU UAAGCCU    U
                   UCAGAGGUC AGG  UUCGAA  UCGG AUUCGGA    G
AACUGGUGCUUCUCGUCAU^        G   CU      CU    U       GAAA 
    110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-879_5p

mirBase accessionMIMAT0004842
Sequence
0- AGAGGCUUAUAGCUCUAAGCCU -22
Get sequence
Proposed targets microrna.org: MIMAT0004842
TargetScanVert: mmu-miR-879-5p
miRDB: MIMAT0004842
Star sequence

Mmu-Mir-879_3p*

mirBase accessionMIMAT0004843
Sequence
34- GCUUAUGGCUUCAAGCUUUCGG -56
Get sequence
Proposed targets microrna.org: MIMAT0004843
TargetScanVert: mmu-miR-879-3p
miRDB: MIMAT0004843