MirGeneDB ID | Cgi-Mir-277 |
Family name |
MIR-277 (all species) |
Seed |
AAAUGCA |
Species |
Pacific oyster (Crassostrea gigas) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aae-Mir-277
Bge-Mir-277
Bpl-Mir-277
Cbr-Mir-277-P6a
Cbr-Mir-277-P6b
Cel-Mir-277
Csc-Mir-277-P18a
Csc-Mir-277-P18b
Cte-Mir-277-P1
Cte-Mir-277-P2
Dan-Mir-277
Dma-Mir-277
Dme-Mir-277
Dmo-Mir-277
Dpu-Mir-277
Dsi-Mir-277
Dya-Mir-277
Efe-Mir-277
Esc-Mir-277
Hme-Mir-277
Isc-Mir-277
Lan-Mir-277-P3
Lan-Mir-277-P4
Lan-Mir-277-P5
Lgi-Mir-277
Lpo-Mir-277-P12
Lpo-Mir-277-P13
Lpo-Mir-277-P14
Lpo-Mir-277-P15
Lpo-Mir-277-P16
Lpo-Mir-277-P17
Npo-Mir-277
Obi-Mir-277
Ovu-Mir-277
Sme-Mir-277-P6a
Sme-Mir-277-P6b
Sme-Mir-277-P7a
Sme-Mir-277-P7b
Tca-Mir-277
|
Node of Origin (locus) |
Protostomia
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Node of Origin (family) |
Protostomia
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Genome context (CGI_GCA_000297895.1) |
scaffold622: 474084-474143 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGGGAAAACAGUAACUGUGUUUCACUGGUCAGUACCAGAUGUGCAUUGUGCAUCCGUAGUAGUAGUGUAAAUGCAUAAUCUGGUAUGUGACCGGCCGAUGCGCUCUCAUCCUAACCUUCA
Get precursor sequence
|
Structure | 10 20 30 40 50
GGGGAAAACAGUAACUGU- U A- - -| G UCCGUA
GU UC CUGGUCA GUACCAGA UGUGCAUU UGCA \
CG AG GGCCAGU UAUGGUCU AUACGUAA AUGU G
ACUUCCAAUCCUACUCUCG U CC G A^ - GAUGAU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
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Star sequence |
Cgi-Mir-277_5p* |
mirBase accession | None |
Sequence |
0- AGUACCAGAUGUGCAUUGUGCA -22
Get sequence
|
Mature sequence |
Cgi-Mir-277_3p |
mirBase accession | None |
Sequence |
37- UAAAUGCAUAAUCUGGUAUGUGA -60
Get sequence
|